RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 LCATP04180 440 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 ERCC1P07992 297 aaPredicted RBP9.3□□□□□ -0.92
CUX1-221ENST00000622516 RAB6AP20340 208 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 MAGEA5P43359 124 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 PLA2G2CQ5R387 149 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 ABHD17BQ5VST6 288 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 CRIP3Q6Q6R5 217 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 SULF2Q8IWU5 870 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 GPR137CQ8N3F9 429 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 MRGPRFQ96AM1 343 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 RAB3CQ96E17 227 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 TRAF4Q9BUZ4 470 aaPredicted RBP9.3□□□□□ -0.92
CUX1-221ENST00000622516 SLC6A15Q9H2J7 730 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 FXYD6-FXYD2A0A087WZ82 144 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 A0A096LPE4 126 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 A0A1W2PPZ6 126 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 SULT1C2O00338 296 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 ANGPTL7O43827 346 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 TPOP07202 933 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 DCAF10Q5QP82 559 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 FAM27BQ5VT28 67 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 RAB12Q6IQ22 244 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 PGAP1Q75T13 922 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 FAM109AQ8N4B1 249 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 OR51T1Q8NGJ9 327 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 PTX4Q96A99 478 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 SEC22AQ96IW7 307 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 ADGRG7Q96K78 797 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 EDEM2Q9BV94 578 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 FXYD6Q9H0Q3 95 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 EMC3Q9P0I2 261 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 OR14I1A6ND48 311 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 DHRS3O75911 302 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 NR2C1P13056 603 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 CCL2P13500 99 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 PI3P19957 117 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 CNR1P21554 472 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 CCL1P22362 96 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 CCNOP22674 350 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 OR3A3P47888 321 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 MECP2P51608 486 aaKnown RBP9.29□□□□□ -0.92
CUX1-221ENST00000622516 FOXG1P55316 489 aaPredicted RBP9.29□□□□□ -0.92
CUX1-221ENST00000622516 GFRA1P56159 465 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 OR1C1Q15619 314 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 LRRC37A5PQ49AS3 106 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 SPICQ8N5J4 248 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 IL22RA1Q8N6P7 574 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 KCNE4Q8WWG9 221 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 ZPBPQ9BS86 351 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 ST6GALNAC5Q9BVH7 336 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 DDA1Q9BW61 102 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 ZNF581Q9P0T4 197 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 OPN4Q9UHM6 478 aa9.29□□□□□ -0.92
CUX1-221ENST00000622516 FAM230AA0A1W2PPH8 454 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 OR2AT4A6NND4 320 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 SPRY1O43609 319 aaPredicted RBP9.28□□□□□ -0.92
CUX1-221ENST00000622516 HLA-AP01891 365 aaKnown RBP9.28□□□□□ -0.92
CUX1-221ENST00000622516 AKR1C4P17516 323 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 SPINK2P20155 84 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 PTGFRP43088 359 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 HTR5AP47898 357 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 MRPS34P82930 218 aaKnown RBP9.28□□□□□ -0.92
CUX1-221ENST00000622516 PSG4Q00888 419 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 DHRS2Q13268 280 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 ARFRP1Q13795 201 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 EXOSC2Q13868 293 aaKnown RBP9.28□□□□□ -0.92
CUX1-221ENST00000622516 SKA3Q8IX90 412 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 ADAD2Q8NCV1 583 aaKnown RBP9.28□□□□□ -0.92
CUX1-221ENST00000622516 OR2M7Q8NG81 312 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 CASTOR1Q8WTX7 329 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 SPTSSAQ969W0 71 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 PNPLA2Q96AD5 504 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 RADILQ96JH8 1075 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 IFT22Q9H7X7 185 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 CALHM2Q9HA72 323 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 TMEM38BQ9NVV0 291 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 CEP250Q9BV73 2442 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 PRR14LQ5THK1 2151 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 PTPRZ1P23471 2315 aaPredicted RBP9.28□□□□□ -0.92
CUX1-221ENST00000622516 SDCBPO00560 298 aaPredicted RBP9.28□□□□□ -0.92
CUX1-221ENST00000622516 CD74P04233 296 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 GABRR1P24046 479 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 CASRP41180 1078 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 SORDQ00796 357 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 BAMBIQ13145 260 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 TSPO2Q5TGU0 170 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 BRICD5Q6PL45 260 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 ZNF767PQ75MW2 155 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 SLC16A14Q7RTX9 510 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 GALNTL5Q7Z4T8 443 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 KCNG3Q8TAE7 436 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 FNDC9Q8TBE3 224 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 FOXB1Q99853 325 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 CST11Q9H112 138 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 PRR13Q9NZ81 148 aa9.28□□□□□ -0.92
CUX1-221ENST00000622516 A0A0A6YYH2 397 aa9.27□□□□□ -0.92
CUX1-221ENST00000622516 PLSCR5A0PG75 271 aa9.27□□□□□ -0.92
CUX1-221ENST00000622516 A6NJ64 397 aa9.27□□□□□ -0.92
CUX1-221ENST00000622516 M0R233 179 aa9.27□□□□□ -0.92
CUX1-221ENST00000622516 SYNGR3O43761 229 aa9.27□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms