RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 OR4C45A6NMZ5 311 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 INAFM1C9JVW0 142 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 SLC1A7O00341 560 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 RHBDL1O75783 438 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 DHRS3O75911 302 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 ZFPL1O95159 310 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 IGHV2-70P01814 119 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 CSF3P09919 207 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 CD80P33681 288 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 TMEM33P57088 247 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 IL18R1Q13478 541 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 IL17RELQ6ZVW7 336 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 FGFRL1Q8N441 504 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 GATAD2BQ8WXI9 593 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 CNBD2Q96M20 576 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 WDR13Q9H1Z4 485 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 VCXQ9H320 206 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 C1orf123Q9NWV4 160 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 FBXO9Q9UK97 447 aaPredicted RBP11.32□□□□□ -0.6
LINC00540-202ENST00000616974 TENM1Q9UKZ4 2725 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 IGHV3OR15-7A0A075B7D8 119 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 ANKRD30BLA7E2S9 258 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 CLDN25C9JDP6 229 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 PTGES3LE9PB15 166 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.32□□□□□ -0.6
LINC00540-202ENST00000616974 CDIPTO14735 213 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 MRPS11P82912 194 aaKnown RBP11.32□□□□□ -0.6
LINC00540-202ENST00000616974 C6orf141Q5SZD1 244 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 ASPHD2Q6ICH7 369 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 LYPD2Q6UXB3 125 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 FAM220AQ7Z4H9 259 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 KLBQ86Z14 1044 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 GCSAMQ8N6F7 178 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 SEMA6DQ8NFY4 1073 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 OR1M1Q8NGA1 313 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 OR8S1Q8NH09 359 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 OR5P3Q8WZ94 311 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 ZNF488Q96MN9 340 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 DIRC2Q96SL1 478 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 ANKRD60Q9BZ19 345 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 RGCCQ9H4X1 137 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 MYOZ1Q9NP98 299 aaPredicted RBP11.32□□□□□ -0.6
LINC00540-202ENST00000616974 DIMT1Q9UNQ2 313 aaKnown RBP11.32□□□□□ -0.6
LINC00540-202ENST00000616974 V9GYS6 101 aa11.32□□□□□ -0.6
LINC00540-202ENST00000616974 DSCAML1Q8TD84 2053 aa11.31□□□□□ -0.6
LINC00540-202ENST00000616974 IGKV1-27A0A075B6S5 117 aa11.31□□□□□ -0.6
LINC00540-202ENST00000616974 SNTNA6NMZ2 147 aa11.31□□□□□ -0.6
LINC00540-202ENST00000616974 GMDSO60547 372 aa11.31□□□□□ -0.6
LINC00540-202ENST00000616974 INMTO95050 263 aa11.31□□□□□ -0.6
LINC00540-202ENST00000616974 TNFRSF1AP19438 455 aa11.31□□□□□ -0.6
LINC00540-202ENST00000616974 CCL1P22362 96 aa11.31□□□□□ -0.6
LINC00540-202ENST00000616974 MYF6P23409 242 aa11.31□□□□□ -0.6
LINC00540-202ENST00000616974 TNFSF4P23510 183 aa11.31□□□□□ -0.6
LINC00540-202ENST00000616974 GATA4P43694 442 aa11.31□□□□□ -0.6
LINC00540-202ENST00000616974 UBE2V2Q15819 145 aa11.31□□□□□ -0.6
LINC00540-202ENST00000616974 TRMT10AQ8TBZ6 339 aaKnown RBP11.31□□□□□ -0.6
LINC00540-202ENST00000616974 TMEM165Q9HC07 324 aa11.31□□□□□ -0.6
LINC00540-202ENST00000616974 FKBP14Q9NWM8 211 aa11.31□□□□□ -0.6
LINC00540-202ENST00000616974 NPTNQ9Y639 398 aa11.31□□□□□ -0.6
LINC00540-202ENST00000616974 A6NLC8 198 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 SYT7O43581 403 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 PTBP3O95758 552 aaKnown RBP11.3□□□□□ -0.6
LINC00540-202ENST00000616974 HTR1AP08908 422 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 FOSL1P15407 271 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 ZFP36P26651 326 aaKnown RBP11.3□□□□□ -0.6
LINC00540-202ENST00000616974 SRP9P49458 86 aaKnown RBP11.3□□□□□ -0.6
LINC00540-202ENST00000616974 BTG1P62324 171 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 KLHL22Q53GT1 634 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 WDR82Q6UXN9 313 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 MOB3CQ70IA8 216 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 BIVMQ86UB2 503 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 SPACA5Q96QH8 159 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 OPA3Q9H6K4 179 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 ERVK-18Q9QC07 812 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 HSPE1-MOB4S4R3N1 261 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 STAB1Q9NY15 2570 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 IGKV1-9A0A0C4DH69 117 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 ZNF816-ZNF321PA0A0X1KG74 233 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 H0YJX3 145 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 AKR7A2O43488 359 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 CST4P01036 141 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 DCKP27707 260 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 DDOSTP39656 456 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 VHLP40337 213 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 MAP2K3P46734 347 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 RIPPLY1Q0D2K3 151 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 ALKBH1Q13686 389 aaKnown RBP11.3□□□□□ -0.6
LINC00540-202ENST00000616974 CALHM1Q8IU99 346 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 ZDHHC23Q8IYP9 409 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 SCCPDHQ8NBX0 429 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 ZNF540Q8NDQ6 660 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 TMEM80Q96HE8 168 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 RNF170Q96K19 258 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 MOB1AQ9H8S9 216 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 SP140LQ9H930 580 aa11.3□□□□□ -0.6
LINC00540-202ENST00000616974 hCG_1807616A0A1W2PRN6 198 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 ACOD1A6NK06 481 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 ZNF732B4DXR9 585 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 SYNGR1O43759 233 aa11.29□□□□□ -0.6
LINC00540-202ENST00000616974 IGHV2-5P01817 119 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms