RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 CHN2P52757 468 aa11.93□□□□□ -0.5
SHKBP1-217ENST00000598558 ACTA2P62736 377 aa11.93□□□□□ -0.5
SHKBP1-217ENST00000598558 ACTG2P63267 376 aa11.93□□□□□ -0.5
SHKBP1-217ENST00000598558 ZNF154Q13106 437 aa11.93□□□□□ -0.5
SHKBP1-217ENST00000598558 ALKBH1Q13686 389 aaKnown RBP11.93□□□□□ -0.5
SHKBP1-217ENST00000598558 ZNF181Q2M3W8 571 aa11.93□□□□□ -0.5
SHKBP1-217ENST00000598558 MOB3CQ70IA8 216 aa11.93□□□□□ -0.5
SHKBP1-217ENST00000598558 DOK3Q7L591 496 aa11.93□□□□□ -0.5
SHKBP1-217ENST00000598558 LRRC28Q86X40 367 aaPredicted RBP11.93□□□□□ -0.5
SHKBP1-217ENST00000598558 OR51A4Q8NGJ6 313 aa11.93□□□□□ -0.5
SHKBP1-217ENST00000598558 OR8S1Q8NH09 359 aa11.93□□□□□ -0.5
SHKBP1-217ENST00000598558 RAB1CQ92928 201 aa11.93□□□□□ -0.5
SHKBP1-217ENST00000598558 ANKRD60Q9BZ19 345 aa11.93□□□□□ -0.5
SHKBP1-217ENST00000598558 GPR173Q9NS66 373 aa11.93□□□□□ -0.5
SHKBP1-217ENST00000598558 C1orf123Q9NWV4 160 aa11.93□□□□□ -0.5
SHKBP1-217ENST00000598558 MPC1Q9Y5U8 109 aa11.93□□□□□ -0.5
SHKBP1-217ENST00000598558 ANK3Q12955 4377 aaKnown RBP11.93□□□□□ -0.5
SHKBP1-217ENST00000598558 CSPG4Q6UVK1 2322 aa11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 SYT7O43581 403 aa11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 CD5LO43866 347 aa11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 LHBP01229 141 aa11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 IGHV2-5P01817 119 aa11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 PIPP12273 146 aaPredicted RBP11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 EGR1P18146 543 aa11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 GNALP38405 381 aa11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 VHLP40337 213 aa11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 CCR9P51686 369 aa11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 FAM76BQ5HYJ3 339 aa11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 AHSA2Q719I0 299 aa11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 ZDHHC23Q8IYP9 409 aa11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 GCSAMQ8N6F7 178 aa11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 RPL3LQ92901 407 aaKnown RBP11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 SEH1LQ96EE3 360 aa11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 ADAT3Q96EY9 351 aaPredicted RBP11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 RNF170Q96K19 258 aa11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 TLNRD1Q9H1K6 362 aa11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 CNOT2Q9NZN8 540 aaKnown RBP11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 CAB39Q9Y376 341 aaPredicted RBP11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 NOP16Q9Y3C1 178 aaKnown RBP11.92□□□□□ -0.5
SHKBP1-217ENST00000598558 MTORP42345 2549 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 A0A1B0GVI7 797 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 EFCAB10A6NFE3 127 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 SLC1A7O00341 560 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 CDIPTO14735 213 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 TNFRSF13BO14836 293 aaPredicted RBP11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 MTRF1O75570 445 aaKnown RBP11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 ZFPL1O95159 310 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 NRASP01111 189 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 ZNF16P17020 682 aaPredicted RBP11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 CD80P33681 288 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 GPM6AP51674 278 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 BTG1P62324 171 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 SLC3A1Q07837 685 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 UBE2V2Q15819 145 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 CEACAM21Q3KPI0 293 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 ZBTB37Q5TC79 503 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 CYB5R2Q6BCY4 276 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 LYPD2Q6UXB3 125 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 WDR82Q6UXN9 313 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 EGFL6Q8IUX8 553 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 BOLLQ8N9W6 283 aaKnown RBP11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 DEFB108BQ8NET1 73 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 RPS4Y2Q8TD47 263 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 GATAD2BQ8WXI9 593 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 RGP1Q92546 391 aaPredicted RBP11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 HPS1Q92902 700 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 ERGIC1Q969X5 290 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 TIMD4Q96H15 378 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 MICU1Q9BPX6 476 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 PDCD1LG2Q9BQ51 273 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 TMEM246Q9BRR3 403 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 VCX3BQ9H321 246 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 OR51I2Q9H344 312 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 ZNF665Q9H7R5 613 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 FN3KRPQ9HA64 309 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 C14orf119Q9NWQ9 140 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 RNF7Q9UBF6 113 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 ENPP5Q9UJA9 477 aa11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 EXOSC1Q9Y3B2 195 aaKnown RBP11.91□□□□□ -0.5
SHKBP1-217ENST00000598558 ISPDA4D126 451 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 A6NLC8 198 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 ANXA2P2A6NMY6 339 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 ZNF732B4DXR9 585 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 PTGES3LE9PB15 166 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 IFNL4K9M1U5 179 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 OGG1O15527 345 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 RHBDL1O75783 438 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 ISG15P05161 165 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 UBCP0CG48 685 aaKnown RBP11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 TGM4P49221 684 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 GZMKP49863 264 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 GBX2P52951 348 aaPredicted RBP11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 CDH15P55291 814 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 SEC61A1P61619 476 aaKnown RBP11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 CLVS2Q5SYC1 327 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 TMEM244Q5VVB8 128 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 PLCXD3Q63HM9 321 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 SFRP4Q6FHJ7 346 aaPredicted RBP11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms