RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 ZNF12P17014 697 aa12.77□□□□□ -0.36
TRIM28-207ENST00000597136 ACKR3P25106 362 aa12.77□□□□□ -0.36
TRIM28-207ENST00000597136 GCH1P30793 250 aa12.77□□□□□ -0.36
TRIM28-207ENST00000597136 FGF9P31371 208 aaPredicted RBP12.77□□□□□ -0.36
TRIM28-207ENST00000597136 GDPGP1Q6ZNW5 385 aa12.77□□□□□ -0.36
TRIM28-207ENST00000597136 LRRC75A-AS1Q8N1F1 130 aa12.77□□□□□ -0.36
TRIM28-207ENST00000597136 WFDC11Q8NEX6 87 aa12.77□□□□□ -0.36
TRIM28-207ENST00000597136 TMEM106AQ96A25 262 aa12.77□□□□□ -0.36
TRIM28-207ENST00000597136 HAVCR1Q96D42 359 aa12.77□□□□□ -0.36
TRIM28-207ENST00000597136 DERL3Q96Q80 235 aa12.77□□□□□ -0.36
TRIM28-207ENST00000597136 RBM38Q9H0Z9 239 aaKnown RBP12.77□□□□□ -0.36
TRIM28-207ENST00000597136 PPIL3Q9H2H8 161 aaKnown RBP12.77□□□□□ -0.36
TRIM28-207ENST00000597136 EXOSC4Q9NPD3 245 aaKnown RBP12.77□□□□□ -0.36
TRIM28-207ENST00000597136 TXNL4BQ9NX01 149 aaKnown RBP12.77□□□□□ -0.36
TRIM28-207ENST00000597136 MALRD1Q5VYJ5 2156 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 ARHGAP32A7KAX9 2087 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 SMIM31A0A1B0GVY4 71 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 A0A1W2PPK0 400 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 DHRS7CA6NNS2 312 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 SSX4O60224 188 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 GABARAPO95166 117 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 UCHL1P09936 223 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 BMP4P12644 408 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 MAPK3P27361 379 aaPredicted RBP12.77□□□□□ -0.37
TRIM28-207ENST00000597136 MAP2K3P46734 347 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 MMP15P51511 669 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 TMBIM6P55061 237 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 CTF1Q16619 201 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 FAM27D1Q5T7N8 215 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 C22orf42Q6IC83 251 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 SEMA6DQ8NFY4 1073 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 PHYHIPQ92561 330 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 THRSPQ92748 146 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 ITFG2Q969R8 447 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 FGGYQ96C11 551 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 ADAT3Q96EY9 351 aaPredicted RBP12.77□□□□□ -0.37
TRIM28-207ENST00000597136 CENPOQ9BU64 300 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 DYNLRB1Q9NP97 96 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 NOX4Q9NPH5 578 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 BATF3Q9NR55 127 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 NDUFA13Q9P0J0 144 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 PIGLQ9Y2B2 252 aa12.77□□□□□ -0.37
TRIM28-207ENST00000597136 GGT3PA6NGU5 568 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 A6NHS1 94 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 A6NIN4 97 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 CD300LBA8K4G0 201 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 M0R233 179 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 PIN1P1O15428 100 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 LILRA1O75019 489 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 CD2P06729 351 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 FAHP16930 419 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 PPOXP50336 477 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 SELENOVP59797 346 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 LSM3P62310 102 aaKnown RBP12.76□□□□□ -0.37
TRIM28-207ENST00000597136 RIPPLY1Q0D2K3 151 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 NKPD1Q17RQ9 610 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 Q5PR19 223 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 OR2T2Q6IF00 324 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 Q6ZR03 302 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 OR5AS1Q8N127 324 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 PARP16Q8N5Y8 322 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 OR56B2PQ8NGI1 322 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 RAB2BQ8WUD1 216 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 RNF167Q9H6Y7 350 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 MSL2Q9HCI7 577 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 PURGQ9UJV8 347 aaKnown RBP12.76□□□□□ -0.37
TRIM28-207ENST00000597136 WNK2Q9Y3S1 2297 aa12.76□□□□□ -0.37
TRIM28-207ENST00000597136 ZNF20P17024 532 aa12.75□□□□□ -0.37
TRIM28-207ENST00000597136 DDOSTP39656 456 aa12.75□□□□□ -0.37
TRIM28-207ENST00000597136 SPRNQ5BIV9 151 aa12.75□□□□□ -0.37
TRIM28-207ENST00000597136 ZNF420Q8TAQ5 688 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-207ENST00000597136 ISOC1Q96CN7 298 aa12.75□□□□□ -0.37
TRIM28-207ENST00000597136 C10orf35Q96D05 121 aa12.75□□□□□ -0.37
TRIM28-207ENST00000597136 ORAI1Q96D31 301 aa12.75□□□□□ -0.37
TRIM28-207ENST00000597136 PLEKHA1Q9HB21 404 aa12.75□□□□□ -0.37
TRIM28-207ENST00000597136 GSTK1Q9Y2Q3 226 aa12.75□□□□□ -0.37
TRIM28-207ENST00000597136 CCDC160A6NGH7 325 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 ANKRD61A6NGH8 418 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 ZSCAN5BA6NJL1 495 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 C17orf100A8MU93 164 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 LYNX1G3V0Z9 82 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 TIMM8AO60220 97 aaPredicted RBP12.74□□□□□ -0.37
TRIM28-207ENST00000597136 ARL6IP5O75915 188 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 F12P00748 615 aaPredicted RBP12.74□□□□□ -0.37
TRIM28-207ENST00000597136 LYNX1P0DP58 116 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 SELEP16581 610 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 KITLGP21583 273 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 CALRP27797 417 aaKnown RBP12.74□□□□□ -0.37
TRIM28-207ENST00000597136 RBMXP38159 391 aaKnown RBP12.74□□□□□ -0.37
TRIM28-207ENST00000597136 EFNA4P52798 201 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 VBP1P61758 197 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 ZBTB37Q5TC79 503 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 FOXB2Q5VYV0 432 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 SERPINA12Q8IW75 414 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 ZNF525Q8N782 197 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 CSNK2A3Q8NEV1 391 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 KCTD7Q96MP8 289 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 BCL7BQ9BQE9 202 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 RAB1BQ9H0U4 201 aa12.74□□□□□ -0.37
TRIM28-207ENST00000597136 MS4A5Q9H3V2 200 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms