RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 AP3S1Q92572 193 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 SPSB1Q96BD6 273 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 PPP1R3EQ9H7J1 279 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 ZNF442Q9H7R0 627 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 PLEKHB1Q9UF11 243 aaPredicted RBP12.55□□□□□ -0.4
VRK3-212ENST00000596814 DAPK2Q9UIK4 370 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 CMAHPQ9Y471 501 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 IFITM5A6NNB3 132 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 ALDOBP05062 364 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 PRF1P14222 555 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 PRKACBP22694 351 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 KLF3P57682 345 aaPredicted RBP12.54□□□□□ -0.4
VRK3-212ENST00000596814 SRSF1Q07955 248 aaKnown RBP eCLIP12.54□□□□□ -0.4
VRK3-212ENST00000596814 MOB3CQ70IA8 216 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 JAGN1Q8N5M9 183 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 TRMT10AQ8TBZ6 339 aaKnown RBP12.54□□□□□ -0.4
VRK3-212ENST00000596814 SSC4DQ8WTU2 575 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 FAM222BQ8WU58 562 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 PIK3IP1Q96FE7 263 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 METTL17Q9H7H0 456 aaPredicted RBP12.54□□□□□ -0.4
VRK3-212ENST00000596814 PLGRKTQ9HBL7 147 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 CGGBP1Q9UFW8 167 aaPredicted RBP12.54□□□□□ -0.4
VRK3-212ENST00000596814 DUSP13Q9UII6 198 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 SLC7A11Q9UPY5 501 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 MPC1Q9Y5U8 109 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 KLF2Q9Y5W3 355 aaPredicted RBP12.54□□□□□ -0.4
VRK3-212ENST00000596814 SLC2A2P11168 524 aaPredicted RBP12.54□□□□□ -0.4
VRK3-212ENST00000596814 CA6P23280 308 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 ZNF93P35789 620 aaPredicted RBP12.54□□□□□ -0.4
VRK3-212ENST00000596814 SELENOVP59797 346 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 HES5Q5TA89 166 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 LRP11Q86VZ4 500 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 OR8G5Q8NG78 346 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 MRPL24Q96A35 216 aaKnown RBP12.54□□□□□ -0.4
VRK3-212ENST00000596814 FOXRED1Q96CU9 486 aaPredicted RBP12.54□□□□□ -0.4
VRK3-212ENST00000596814 SPACA5Q96QH8 159 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 NKX3-1Q99801 234 aaPredicted RBP12.54□□□□□ -0.4
VRK3-212ENST00000596814 SYT3Q9BQG1 590 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 NXF2Q9GZY0 626 aaKnown RBP12.54□□□□□ -0.4
VRK3-212ENST00000596814 ABCB9Q9NP78 766 aa12.54□□□□□ -0.4
VRK3-212ENST00000596814 IGLV3-9A0A075B6K5 115 aa12.53□□□□□ -0.4
VRK3-212ENST00000596814 SLC17A2O00624 439 aa12.53□□□□□ -0.4
VRK3-212ENST00000596814 TMEM127O75204 238 aa12.53□□□□□ -0.4
VRK3-212ENST00000596814 CLPXO76031 633 aa12.53□□□□□ -0.4
VRK3-212ENST00000596814 IGHV3-13P01766 116 aa12.53□□□□□ -0.4
VRK3-212ENST00000596814 CFPP27918 469 aa12.53□□□□□ -0.4
VRK3-212ENST00000596814 LOXP28300 417 aaPredicted RBP12.53□□□□□ -0.4
VRK3-212ENST00000596814 LHFPL2Q6ZUX7 228 aa12.53□□□□□ -0.4
VRK3-212ENST00000596814 CDH26Q8IXH8 852 aa12.53□□□□□ -0.4
VRK3-212ENST00000596814 HPSE2Q8WWQ2 592 aa12.53□□□□□ -0.4
VRK3-212ENST00000596814 DVL3Q92997 716 aaPredicted RBP12.53□□□□□ -0.4
VRK3-212ENST00000596814 KCTD12Q96CX2 325 aaKnown RBP12.53□□□□□ -0.4
VRK3-212ENST00000596814 BORCS8Q96FH0 119 aa12.53□□□□□ -0.4
VRK3-212ENST00000596814 CPNE2Q96FN4 548 aaPredicted RBP12.53□□□□□ -0.4
VRK3-212ENST00000596814 SORCS2Q96PQ0 1159 aa12.53□□□□□ -0.4
VRK3-212ENST00000596814 HS3ST6Q96QI5 342 aa12.53□□□□□ -0.4
VRK3-212ENST00000596814 HIST1H2AAQ96QV6 131 aa12.53□□□□□ -0.4
VRK3-212ENST00000596814 UQCC2Q9BRT2 126 aa12.53□□□□□ -0.4
VRK3-212ENST00000596814 ADAT1Q9BUB4 502 aaKnown RBP12.53□□□□□ -0.4
VRK3-212ENST00000596814 MRPL37Q9BZE1 423 aaKnown RBP12.53□□□□□ -0.4
VRK3-212ENST00000596814 C6orf62Q9GZU0 229 aaPredicted RBP12.53□□□□□ -0.4
VRK3-212ENST00000596814 SMURF1Q9HCE7 757 aa12.53□□□□□ -0.4
VRK3-212ENST00000596814 A3GALT2U3KPV4 340 aa12.53□□□□□ -0.4
VRK3-212ENST00000596814 A0A075B6Q4 140 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 FAM230AA0A1W2PPH8 454 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 J3QKU1 62 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 CD37P11049 281 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 THBS2P35442 1172 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 FUT6P51993 359 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 KISS1Q15726 138 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 ADIPOQQ15848 244 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 RAB11BQ15907 218 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 CEACAM21Q3KPI0 293 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 C1orf100Q5SVJ3 147 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 MEX3BQ6ZN04 569 aaKnown RBP12.52□□□□□ -0.41
VRK3-212ENST00000596814 LYPD6Q86Y78 171 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 OR6M1Q8NGM8 313 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 ACOT12Q8WYK0 555 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 ITPKCQ96DU7 683 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 GPER1Q99527 375 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 TMEM204Q9BSN7 226 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 SLC22A4Q9H015 551 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 MMP27Q9H306 513 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 TMEM100Q9NV29 134 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 MYEF2Q9P2K5 600 aaKnown RBP12.52□□□□□ -0.41
VRK3-212ENST00000596814 STEAP1Q9UHE8 339 aa12.52□□□□□ -0.41
VRK3-212ENST00000596814 VSTM5A8MXK1 200 aa12.51□□□□□ -0.41
VRK3-212ENST00000596814 PRSS44E7EML9 344 aa12.51□□□□□ -0.41
VRK3-212ENST00000596814 E7EQL1 145 aa12.51□□□□□ -0.41
VRK3-212ENST00000596814 PLAUP00749 431 aa12.51□□□□□ -0.41
VRK3-212ENST00000596814 OR4A8P0C604 315 aa12.51□□□□□ -0.41
VRK3-212ENST00000596814 HTR2CP28335 458 aa12.51□□□□□ -0.41
VRK3-212ENST00000596814 RBP2P50120 134 aa12.51□□□□□ -0.41
VRK3-212ENST00000596814 MTCP1P56278 107 aa12.51□□□□□ -0.41
VRK3-212ENST00000596814 CLDN12P56749 244 aa12.51□□□□□ -0.41
VRK3-212ENST00000596814 PNLDC1Q8NA58 520 aaKnown RBP12.51□□□□□ -0.41
VRK3-212ENST00000596814 OR8S1Q8NH09 359 aa12.51□□□□□ -0.41
VRK3-212ENST00000596814 ZNF671Q8TAW3 534 aa12.51□□□□□ -0.41
VRK3-212ENST00000596814 OR5P3Q8WZ94 311 aa12.51□□□□□ -0.41
VRK3-212ENST00000596814 NEUROG1Q92886 237 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms