RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 PPP1R3EQ9H7J1 279 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 PATZ1Q9HBE1 687 aaKnown RBP12.63□□□□□ -0.39
UPF1-202ENST00000594243 TMEM165Q9HC07 324 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 ACOXLQ9NUZ1 547 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 C1orf123Q9NWV4 160 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 ERVK13-1Q9NX77 482 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 V9GYS6 101 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 DYSFO75923 2080 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 NSD1Q96L73 2696 aaPredicted RBP12.63□□□□□ -0.39
UPF1-202ENST00000594243 A0A1B0GTI1 187 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 A0A1B0GVI7 797 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 TMEM210A6NLX4 147 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 CRLF1O75462 422 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 HTR1AP08908 422 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 UBCP0CG48 685 aaKnown RBP12.62□□□□□ -0.39
UPF1-202ENST00000594243 ZNF12P17014 697 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 CCL1P22362 96 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 DCKP27707 260 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 RBMXP38159 391 aaKnown RBP12.62□□□□□ -0.39
UPF1-202ENST00000594243 PSMB10P40306 273 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 MRPL28Q13084 256 aaKnown RBP12.62□□□□□ -0.39
UPF1-202ENST00000594243 HNRNPA0Q13151 305 aaKnown RBP12.62□□□□□ -0.39
UPF1-202ENST00000594243 KCNJ8Q15842 424 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 SMN1Q16637 294 aaKnown RBP12.62□□□□□ -0.39
UPF1-202ENST00000594243 ODF4Q2M2E3 257 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 CEACAM21Q3KPI0 293 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 WDR38Q5JTN6 314 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 FDX2Q6P4F2 183 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 Q6ZSR3 168 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 KCTD8Q6ZWB6 473 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 MOB3CQ70IA8 216 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 GLCCI1Q86VQ1 547 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 SYS1Q8N2H4 156 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 OR5A2Q8NGI9 324 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 OR14K1Q8NGZ2 314 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 POM121Q96HA1 1249 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 C4orf36Q96KX1 117 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 FGF20Q9NP95 211 aaPredicted RBP12.62□□□□□ -0.39
UPF1-202ENST00000594243 TRIM36Q9NQ86 728 aa12.62□□□□□ -0.39
UPF1-202ENST00000594243 TRAV20A0A0B4J274 112 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 hCG_1807616A0A1W2PRN6 198 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 SYT7O43581 403 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 ZNF205O95201 554 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 NRASP01111 189 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 FAHP16930 419 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 CCR9P51686 369 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 ZNF154Q13106 437 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 ZNF404Q494X3 552 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 FAM76BQ5HYJ3 339 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 CLVS2Q5SYC1 327 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 TMEM244Q5VVB8 128 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 C11orf53Q8IXP5 236 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 PRSS35Q8N3Z0 413 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 OR2G2Q8NGZ5 317 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 HAVCR2Q8TDQ0 301 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 TFAP2CQ92754 450 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 TMEM186Q96B77 213 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 JAM3Q9BX67 310 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 SHARPINQ9H0F6 387 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 TLNRD1Q9H1K6 362 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 LPAR2Q9HBW0 351 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 FRRS1LQ9P0K9 344 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 LPAR3Q9UBY5 353 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 MIOXQ9UGB7 285 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 CDC42EP3Q9UKI2 254 aa12.61□□□□□ -0.39
UPF1-202ENST00000594243 YLPM1P49750 1951 aaKnown RBP12.61□□□□□ -0.39
UPF1-202ENST00000594243 TRAV38-1A0A0B4J264 116 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 OR5B21A6NL26 309 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 CDIPTO14735 213 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 PLPP2O43688 288 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 FOXH1O75593 365 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 LHBP01229 141 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 ISG15P05161 165 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 RPSAP08865 295 aaKnown RBP12.6□□□□□ -0.39
UPF1-202ENST00000594243 HOXB4P17483 251 aaPredicted RBP12.6□□□□□ -0.39
UPF1-202ENST00000594243 HNF1AP20823 631 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 THBS2P35442 1172 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 CFHR2P36980 270 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 GNG3P63215 75 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 MED21Q13503 144 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 CHRFAM7AQ494W8 412 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 CEP78Q5JTW2 689 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 ZNF826PQ6ZT77 177 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 ZNF771Q7L3S4 317 aaPredicted RBP12.6□□□□□ -0.39
UPF1-202ENST00000594243 WDR86Q86TI4 376 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 BOLLQ8N9W6 283 aaKnown RBP12.6□□□□□ -0.39
UPF1-202ENST00000594243 NRG4Q8WWG1 115 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 C10orf35Q96D05 121 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 PELI1Q96FA3 418 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 TMEM246Q9BRR3 403 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 ZNF649Q9BS31 505 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 BEX2Q9BXY8 128 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 ISG20L2Q9H9L3 353 aaKnown RBP12.6□□□□□ -0.39
UPF1-202ENST00000594243 PLEKHA1Q9HB21 404 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 HIF1ANQ9NWT6 349 aa12.6□□□□□ -0.39
UPF1-202ENST00000594243 CHCHD3Q9NX63 227 aaKnown RBP12.6□□□□□ -0.39
UPF1-202ENST00000594243 ZANQ9Y493 2812 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 OOEPA6NGQ2 149 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 CEACAM18A8MTB9 384 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 ZNF732B4DXR9 585 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms