RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	VWA8	A3KMH1	1905 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	CD300LB	A8K4G0	201 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	PLPP3	O14495	311 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	CDC14B	O60729	498 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	PLXNA2	O75051	1894 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	ICOSLG	O75144	302 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	RBMXL2	O75526	392 aa	Known RBP	3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	THY1	P04216	161 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	FOLR1	P15328	257 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	PEBP1	P30086	187 aa	Known RBP	3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	GPR3	P46089	330 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	DHPS	P49366	369 aa	Predicted RBP	3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	KNTC1	P50748	2209 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	IDH3G	P51553	393 aa	Predicted RBP	3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	AKR1C2	P52895	323 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	TAS2R30	P59541	319 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	FXYD4	P59646	89 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	SNRPE	P62304	92 aa	Known RBP	3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	AKR1C1	Q04828	323 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	MRPL49	Q13405	166 aa	Known RBP	3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	LINC01590	Q5TEZ4	76 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	DCAF12L2	Q5VW00	463 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	MARCH3	Q86UD3	253 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	PRSS58	Q8IYP2	241 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	PRR22	Q8IZ63	422 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	ADPRHL1	Q8NDY3	354 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	NOXO1	Q8NFA2	376 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	OR13D1	Q8NGV5	346 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	OR4C3	Q8NH37	302 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	ADAMTS17	Q8TE56	1095 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	RNF133	Q8WVZ7	376 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	SLAMF9	Q96A28	289 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	PINX1	Q96BK5	328 aa	Known RBP	3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	AKR1E2	Q96JD6	320 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	GABRG3	Q99928	467 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	C6orf106	Q9H6K1	298 aa	Predicted RBP	3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	RAB9B	Q9NP90	201 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	KCNIP2	Q9NS61	270 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	FBXO34	Q9NWN3	711 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	PLEK2	Q9NYT0	353 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	METTL1	Q9UBP6	276 aa	Known RBP	3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	AK3	Q9UIJ7	227 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	RARRES3	Q9UL19	164 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	VSIG4	Q9Y279	399 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	PIAS3	Q9Y6X2	628 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	NAV3	Q8IVL0	2385 aa		3.16	□□□□□ -1.9
VMP1-216	ENST00000592790	NSG1	A0A0A6YYJ2	146 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790		A0A1B0GX78	115 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	IDS	B3KWA1	339 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	FGF16	O43320	207 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	SOX15	O60248	233 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	MOSPD3	O75425	235 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	TBX6	O95947	436 aa	Predicted RBP	3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	HPN	P05981	417 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	CT62	P0C5K7	136 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	OR5H8	P0DN80	308 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	SPP1	P10451	314 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	PTHLH	P12272	177 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	MMP9	P14780	707 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	ST6GAL1	P15907	406 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	RAB5A	P20339	215 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	SDHB	P21912	280 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	AADAC	P22760	399 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	DTYMK	P23919	212 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	HOXC12	P31275	282 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	KIR3DL2	P43630	455 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	RBP2	P50120	134 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	NDUFA6	P56556	154 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	IGLV3-21	P80748	117 aa	Predicted RBP	3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	FABP9	Q0Z7S8	132 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	RAB32	Q13637	225 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	ZNF239	Q16600	458 aa	Known RBP	3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	ZNF260	Q3ZCT1	412 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	ZNF684	Q5T5D7	378 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	CARD17	Q5XLA6	110 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	CLEC18B	Q6UXF7	455 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	BEND4	Q6ZU67	534 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	LINC00346	Q8IVM7	164 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	ZFP82	Q8N141	532 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	CRIPAK	Q8N1N5	446 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	TMEM156	Q8N614	296 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	UBAC2	Q8NBM4	344 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	SEMA6D	Q8NFY4	1073 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	OR1N1	Q8NGS0	311 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	OR51E1	Q8TCB6	317 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	ST7L	Q8TDW4	575 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	NINJ1	Q92982	152 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	ARSG	Q96EG1	525 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	MENT	Q9BUN1	341 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	PBX4	Q9BYU1	374 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	PRRG4	Q9BZD6	226 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	WWTR1	Q9GZV5	400 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	MS4A7	Q9GZW8	240 aa	Predicted RBP	3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	NXF5	Q9H1B4	397 aa	Known RBP	3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	PCED1A	Q9H1Q7	454 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	CNTD2	Q9H8S5	307 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	RCC2	Q9P258	522 aa	Known RBP	3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	B3GALT1	Q9Y5Z6	326 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790	SPEG	Q15772	3267 aa		3.15	□□□□□ -1.9
VMP1-216	ENST00000592790		A8MXE2	369 aa		3.15	□□□□□ -1.9

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms