RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 MRM2Q9UI43 246 aaKnown RBP19.92■□□□□ 0.78
SHMT1-206ENST00000579558 ZNF816-ZNF321PA0A0X1KG74 233 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 ADAM20O43506 726 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 NDUFA2O43678 99 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 SRSF10O75494 262 aaKnown RBP19.91■□□□□ 0.78
SHMT1-206ENST00000579558 APOL3O95236 402 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 GYPAP02724 150 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 ATP6V1B1P15313 513 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 PAX8Q06710 450 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 ZIK1Q3SY52 487 aaPredicted RBP19.91■□□□□ 0.78
SHMT1-206ENST00000579558 WDR82Q6UXN9 313 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 ZNF841Q6ZN19 808 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 PLEKHG7Q6ZR37 379 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 KCTD8Q6ZWB6 473 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 FAM90A1Q86YD7 464 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 CBR4Q8N4T8 237 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 SEMA6DQ8NFY4 1073 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 RFKQ969G6 155 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 ITFG2Q969R8 447 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 EME1Q96AY2 570 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 RNF170Q96K19 258 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 TECTBQ96PL2 329 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 HIST1H2AAQ96QV6 131 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 TLNRD1Q9H1K6 362 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 MOB1AQ9H8S9 216 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 S100A14Q9HCY8 104 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 ERVK-18Q9QC07 812 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 CTSZQ9UBR2 303 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 R4GMQ9 66 aa19.91■□□□□ 0.78
SHMT1-206ENST00000579558 IGHV3OR15-7A0A075B7D8 119 aa19.9■□□□□ 0.78
SHMT1-206ENST00000579558 TMEM210A6NLX4 147 aa19.9■□□□□ 0.78
SHMT1-206ENST00000579558 CDIPTO14735 213 aa19.9■□□□□ 0.78
SHMT1-206ENST00000579558 VENTXO95231 258 aa19.9■□□□□ 0.78
SHMT1-206ENST00000579558 IGLV3-1P01715 115 aa19.9■□□□□ 0.78
SHMT1-206ENST00000579558 TTRP02766 147 aa19.9■□□□□ 0.78
SHMT1-206ENST00000579558 ATP6V1E1P36543 226 aa19.9■□□□□ 0.78
SHMT1-206ENST00000579558 NPY4RP50391 375 aa19.9■□□□□ 0.78
SHMT1-206ENST00000579558 TMED1Q13445 227 aa19.9■□□□□ 0.78
SHMT1-206ENST00000579558 BCL2L15Q5TBC7 163 aa19.9■□□□□ 0.78
SHMT1-206ENST00000579558 TEX36Q5VZQ5 186 aa19.9■□□□□ 0.78
SHMT1-206ENST00000579558 SSX6Q7RTT6 188 aa19.9■□□□□ 0.78
SHMT1-206ENST00000579558 THAP5Q7Z6K1 395 aa19.9■□□□□ 0.78
SHMT1-206ENST00000579558 BPIFB2Q8N4F0 458 aa19.9■□□□□ 0.78
SHMT1-206ENST00000579558 HPSE2Q8WWQ2 592 aa19.9■□□□□ 0.78
SHMT1-206ENST00000579558 HRASLS5Q96KN8 279 aa19.9■□□□□ 0.78
SHMT1-206ENST00000579558 FGF23Q9GZV9 251 aaPredicted RBP19.9■□□□□ 0.78
SHMT1-206ENST00000579558 A0A1W2PQL4 384 aaPredicted RBP19.89■□□□□ 0.77
SHMT1-206ENST00000579558 TNFRSF13BO14836 293 aaPredicted RBP19.89■□□□□ 0.77
SHMT1-206ENST00000579558 KRT8P05787 483 aa19.89■□□□□ 0.77
SHMT1-206ENST00000579558 OR2T7P0C7T2 308 aa19.89■□□□□ 0.77
SHMT1-206ENST00000579558 RIPPLY1Q0D2K3 151 aa19.89■□□□□ 0.77
SHMT1-206ENST00000579558 YIPF7Q8N8F6 280 aa19.89■□□□□ 0.77
SHMT1-206ENST00000579558 OR10H4Q8NGA5 316 aa19.89■□□□□ 0.77
SHMT1-206ENST00000579558 OR2T27Q8NH04 317 aa19.89■□□□□ 0.77
SHMT1-206ENST00000579558 TRUB1Q8WWH5 349 aaKnown RBP19.89■□□□□ 0.77
SHMT1-206ENST00000579558 RPL3LQ92901 407 aaKnown RBP19.89■□□□□ 0.77
SHMT1-206ENST00000579558 UBE2FQ969M7 185 aa19.89■□□□□ 0.77
SHMT1-206ENST00000579558 DACT3Q96B18 629 aaPredicted RBP19.89■□□□□ 0.77
SHMT1-206ENST00000579558 SLC6A7Q99884 636 aa19.89■□□□□ 0.77
SHMT1-206ENST00000579558 NUDT16L1Q9BRJ7 211 aaKnown RBP19.89■□□□□ 0.77
SHMT1-206ENST00000579558 OR52A1Q9UKL2 312 aa19.89■□□□□ 0.77
SHMT1-206ENST00000579558 MTRF1O75570 445 aaKnown RBP19.88■□□□□ 0.77
SHMT1-206ENST00000579558 FPR2P25090 351 aa19.88■□□□□ 0.77
SHMT1-206ENST00000579558 CFHR2P36980 270 aa19.88■□□□□ 0.77
SHMT1-206ENST00000579558 MICBQ29980 383 aa19.88■□□□□ 0.77
SHMT1-206ENST00000579558 CEP78Q5JTW2 689 aa19.88■□□□□ 0.77
SHMT1-206ENST00000579558 KRT74Q7RTS7 529 aa19.88■□□□□ 0.77
SHMT1-206ENST00000579558 C22orf15Q8WYQ4 148 aa19.88■□□□□ 0.77
SHMT1-206ENST00000579558 C9orf16Q9BUW7 83 aa19.88■□□□□ 0.77
SHMT1-206ENST00000579558 SUCNR1Q9BXA5 334 aa19.88■□□□□ 0.77
SHMT1-206ENST00000579558 NUP50Q9UKX7 468 aa19.88■□□□□ 0.77
SHMT1-206ENST00000579558 PIGLQ9Y2B2 252 aa19.88■□□□□ 0.77
SHMT1-206ENST00000579558 SNX5Q9Y5X3 404 aa19.88■□□□□ 0.77
SHMT1-206ENST00000579558 KIR2DS1A0A191URI9 304 aa19.87■□□□□ 0.77
SHMT1-206ENST00000579558 SRRM5B3KS81 715 aa19.87■□□□□ 0.77
SHMT1-206ENST00000579558 C22orf46C9J442 243 aa19.87■□□□□ 0.77
SHMT1-206ENST00000579558 DHRS3O75911 302 aa19.87■□□□□ 0.77
SHMT1-206ENST00000579558 RPP14O95059 124 aaKnown RBP19.87■□□□□ 0.77
SHMT1-206ENST00000579558 MUC1P15941 1255 aaPredicted RBP19.87■□□□□ 0.77
SHMT1-206ENST00000579558 FAHP16930 419 aa19.87■□□□□ 0.77
SHMT1-206ENST00000579558 GPM6AP51674 278 aa19.87■□□□□ 0.77
SHMT1-206ENST00000579558 KLF17Q5JT82 389 aaPredicted RBP19.87■□□□□ 0.77
SHMT1-206ENST00000579558 ZBTB37Q5TC79 503 aa19.87■□□□□ 0.77
SHMT1-206ENST00000579558 USP43Q70EL4 1123 aa19.87■□□□□ 0.77
SHMT1-206ENST00000579558 ELMOD2Q8IZ81 293 aa19.87■□□□□ 0.77
SHMT1-206ENST00000579558 PQLC1Q8N2U9 271 aa19.87■□□□□ 0.77
SHMT1-206ENST00000579558 SCCPDHQ8NBX0 429 aa19.87■□□□□ 0.77
SHMT1-206ENST00000579558 OR10Z1Q8NGY1 313 aa19.87■□□□□ 0.77
SHMT1-206ENST00000579558 SMURF1Q9HCE7 757 aa19.87■□□□□ 0.77
SHMT1-206ENST00000579558 ENPP5Q9UJA9 477 aa19.87■□□□□ 0.77
SHMT1-206ENST00000579558 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP19.87■□□□□ 0.77
SHMT1-206ENST00000579558 METTL15A6NJ78 407 aa19.86■□□□□ 0.77
SHMT1-206ENST00000579558 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP19.86■□□□□ 0.77
SHMT1-206ENST00000579558 ENSAO43768 121 aaKnown RBP19.86■□□□□ 0.77
SHMT1-206ENST00000579558 ENTPD6O75354 484 aa19.86■□□□□ 0.77
SHMT1-206ENST00000579558 HILS1P60008 231 aa19.86■□□□□ 0.77
SHMT1-206ENST00000579558 GMFBP60983 142 aa19.86■□□□□ 0.77
SHMT1-206ENST00000579558 GNG3P63215 75 aa19.86■□□□□ 0.77
SHMT1-206ENST00000579558 CEACAM21Q3KPI0 293 aa19.86■□□□□ 0.77
SHMT1-206ENST00000579558 FAM76BQ5HYJ3 339 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms