RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 MPC1Q9Y5U8 109 aa11.75□□□□□ -0.53
CCDC40-209ENST00000573474 CFAP46Q8IYW2 2715 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 DPRXA6NFQ7 191 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 IQCF6A8MYZ5 107 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 CLDN25C9JDP6 229 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 ATP6V1G2-DDX39BF2Z307 99 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 ZG16O60844 167 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 C1QL1O75973 258 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 BMP4P12644 408 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 KITLGP21583 273 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 GRNP28799 593 aaKnown RBP11.74□□□□□ -0.53
CCDC40-209ENST00000573474 MPV17P39210 176 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 ETV6P41212 452 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 FUT6P51993 359 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 CLDN12P56749 244 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 RPS23P62266 143 aaKnown RBP11.74□□□□□ -0.53
CCDC40-209ENST00000573474 NKX6-1P78426 367 aaPredicted RBP11.74□□□□□ -0.53
CCDC40-209ENST00000573474 TFF3Q07654 80 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 PRDX4Q13162 271 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 SNTB2Q13425 540 aaKnown RBP11.74□□□□□ -0.53
CCDC40-209ENST00000573474 ZNF846Q147U1 533 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 KISS1Q15726 138 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 SPANXN2Q5MJ10 180 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 RGS7BPQ6MZT1 257 aaPredicted RBP11.74□□□□□ -0.53
CCDC40-209ENST00000573474 LHFPL2Q6ZUX7 228 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 SAMD12Q8N8I0 201 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 OR5H6Q8NGV6 325 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 LGALS14Q8TCE9 139 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 NPRL2Q8WTW4 380 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 FAM3DQ96BQ1 224 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 CPNE2Q96FN4 548 aaPredicted RBP11.74□□□□□ -0.53
CCDC40-209ENST00000573474 RADILQ96JH8 1075 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 HIST1H2AAQ96QV6 131 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 GPER1Q99527 375 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 CNTD2Q9H8S5 307 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 GPR160Q9UJ42 338 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 ETV7Q9Y603 341 aa11.74□□□□□ -0.53
CCDC40-209ENST00000573474 LOC100289279A0A1B0GTE1 492 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 FAM230AA0A1W2PPH8 454 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 FAM25AB3EWG3 89 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 FAM25CB3EWG5 89 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 FAM25GB3EWG6 89 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 ARSBP15848 533 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 RBP2P50120 134 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 FABP6P51161 128 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 ATP1B3P54709 279 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 MTCP1P56278 107 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 ZNF45Q02386 682 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 BSPH1Q075Z2 132 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 CEACAM21Q3KPI0 293 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 C2orf76Q3KRA6 126 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 LRRC28Q86X40 367 aaPredicted RBP11.73□□□□□ -0.53
CCDC40-209ENST00000573474 ANGPTL5Q86XS5 388 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 ZDHHC23Q8IYP9 409 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 MFSD4AQ8N468 514 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 PNLDC1Q8NA58 520 aaKnown RBP11.73□□□□□ -0.53
CCDC40-209ENST00000573474 BHLHE23Q8NDY6 225 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 NUP37Q8NFH4 326 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 OR51D1Q8NGF3 324 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 OR4D6Q8NGJ1 314 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 LINC01560Q8TB33 94 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 BORCS8Q96FH0 119 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 DIRAS2Q96HU8 199 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 SPACA5Q96QH8 159 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 WDR12Q9GZL7 423 aaKnown RBP11.73□□□□□ -0.53
CCDC40-209ENST00000573474 CXorf56Q9H5V9 222 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 ESRP2Q9H6T0 727 aaKnown RBP11.73□□□□□ -0.53
CCDC40-209ENST00000573474 PPP1R3EQ9H7J1 279 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 CRIM1Q9NZV1 1036 aa11.73□□□□□ -0.53
CCDC40-209ENST00000573474 PURGQ9UJV8 347 aaKnown RBP11.73□□□□□ -0.53
CCDC40-209ENST00000573474 TUBAL3A6NHL2 446 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 ABCD4O14678 606 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 TIMM8AO60220 97 aaPredicted RBP11.72□□□□□ -0.53
CCDC40-209ENST00000573474 LILRA1O75019 489 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 BPNT1O95861 308 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 APOA1P02647 267 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 ZNF250P15622 560 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 ELK1P19419 428 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 POU3F4P49335 361 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 EVX1P49640 407 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 DMRTC1Q5HYR2 192 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 UBE2NLQ5JXB2 153 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 NCMAPQ5T1S8 102 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 RNF144BQ7Z419 303 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 PIAS4Q8N2W9 510 aaPredicted RBP11.72□□□□□ -0.53
CCDC40-209ENST00000573474 OR5A2Q8NGI9 324 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 SYNPRQ8TBG9 265 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 OR5P3Q8WZ94 311 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 NKX3-1Q99801 234 aaPredicted RBP11.72□□□□□ -0.53
CCDC40-209ENST00000573474 CYSLTR2Q9NS75 346 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 MRPS28Q9Y2Q9 187 aaKnown RBP11.72□□□□□ -0.53
CCDC40-209ENST00000573474 NOP16Q9Y3C1 178 aaKnown RBP11.72□□□□□ -0.53
CCDC40-209ENST00000573474 PRR14LQ5THK1 2151 aa11.72□□□□□ -0.53
CCDC40-209ENST00000573474 PQLC2LA1A4F0 135 aa11.71□□□□□ -0.53
CCDC40-209ENST00000573474 EIF4EP06730 217 aaKnown RBP11.71□□□□□ -0.53
CCDC40-209ENST00000573474 UBBP0CG47 229 aa11.71□□□□□ -0.53
CCDC40-209ENST00000573474 CA6P23280 308 aa11.71□□□□□ -0.53
CCDC40-209ENST00000573474 PEX19P40855 299 aa11.71□□□□□ -0.53
CCDC40-209ENST00000573474 PTGFRP43088 359 aa11.71□□□□□ -0.53
CCDC40-209ENST00000573474 OR3A4PP47883 348 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms