RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 EGR3Q06889 387 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 ZNF154Q13106 437 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 PRDX4Q13162 271 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 KPNB1Q14974 876 aaKnown RBP6.78□□□□□ -1.32
VPS53-214ENST00000572607 MPPED2Q15777 294 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 AADACL4Q5VUY2 407 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 ZNF322Q6U7Q0 402 aaPredicted RBP6.78□□□□□ -1.32
VPS53-214ENST00000572607 PRSS45Q7RTY3 260 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 ZDHHC23Q8IYP9 409 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 ZNF679Q8IYX0 411 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 BPIFB2Q8N4F0 458 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 OR8B12Q8NGG6 310 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 OR51G2Q8NGK0 314 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 OR8J1Q8NGP2 316 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 RFKQ969G6 155 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 ITFG2Q969R8 447 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 TECTBQ96PL2 329 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 JMJD8Q96S16 334 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 TMEM246Q9BRR3 403 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 SUCNR1Q9BXA5 334 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 GABARAPL3Q9BY60 117 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 TTTY10Q9BZA0 68 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 PBOV1Q9GZY1 135 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 CLN6Q9NWW5 311 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 ERVK-18Q9QC07 812 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 KLHDC2Q9Y2U9 406 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 AUP1Q9Y679 476 aa6.78□□□□□ -1.32
VPS53-214ENST00000572607 TMEM210A6NLX4 147 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 SNTNA6NMZ2 147 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 ZNF850A8MQ14 1090 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 LOC110117498-PIK3R3F6TDL0 507 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 M0R129 80 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 PSMD9O00233 223 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 PAX4O43316 350 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 ADAM20O43506 726 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 CST4P01036 141 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 ATP6V1B1P15313 513 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 ADRA2CP18825 462 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 ANOS1P23352 680 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 HTR1FP30939 366 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 RBMXP38159 391 aaKnown RBP6.77□□□□□ -1.33
VPS53-214ENST00000572607 ALDH3A2P51648 485 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 CXCR4P61073 352 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 ROM1Q03395 351 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 TMED1Q13445 227 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 FAM201AQ5SY85 155 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 BCL2L15Q5TBC7 163 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 CD276Q5ZPR3 534 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 SFRP4Q6FHJ7 346 aaPredicted RBP6.77□□□□□ -1.33
VPS53-214ENST00000572607 RBMS3Q6XE24 437 aaKnown RBP6.77□□□□□ -1.33
VPS53-214ENST00000572607 FAM220AQ7Z4H9 259 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 BCDIN3DQ7Z5W3 292 aaKnown RBP6.77□□□□□ -1.33
VPS53-214ENST00000572607 GALNT4Q8N4A0 578 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 C19orf18Q8NEA5 215 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 SEMA6DQ8NFY4 1073 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 OR1M1Q8NGA1 313 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 LRRC29Q8WV35 223 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 TRUB1Q8WWH5 349 aaKnown RBP6.77□□□□□ -1.33
VPS53-214ENST00000572607 PIGCQ92535 297 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 STMN2Q93045 179 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 FAM71F1Q96KD3 344 aaPredicted RBP6.77□□□□□ -1.33
VPS53-214ENST00000572607 PKP2Q99959 881 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 C9orf16Q9BUW7 83 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 RNPEPL1Q9HAU8 725 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 ADGRL4Q9HBW9 690 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 MMP26Q9NRE1 261 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 FAM206AQ9NX38 181 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 HAO2Q9NYQ3 351 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 ZNF319Q9P2F9 582 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 ENPP5Q9UJA9 477 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.77□□□□□ -1.33
VPS53-214ENST00000572607 COPS3Q9UNS2 423 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 POLR3KQ9Y2Y1 108 aaPredicted RBP6.77□□□□□ -1.33
VPS53-214ENST00000572607 RHBDD3Q9Y3P4 386 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 INSIG2Q9Y5U4 225 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 TENM1Q9UKZ4 2725 aa6.77□□□□□ -1.33
VPS53-214ENST00000572607 MEGF8Q7Z7M0 2845 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 IGHV2-70DA0A0C4DH43 119 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 A0A0U1RQV5 110 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 TRAPPC2LH3BP13 241 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 TRIM77I1YAP6 450 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 EI24O14681 340 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 ENSAO43768 121 aaKnown RBP6.76□□□□□ -1.33
VPS53-214ENST00000572607 OR2T7P0C7T2 308 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 MUC1P15941 1255 aaPredicted RBP6.76□□□□□ -1.33
VPS53-214ENST00000572607 EPHA2P29317 976 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 POLR2IP36954 125 aaKnown RBP6.76□□□□□ -1.33
VPS53-214ENST00000572607 RIPPLY1Q0D2K3 151 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 MICBQ29980 383 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 MEDAGQ5VYS4 303 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 WDR25Q64LD2 544 aaPredicted RBP6.76□□□□□ -1.33
VPS53-214ENST00000572607 ZNF826PQ6ZT77 177 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 GCSAMQ8N6F7 178 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 YIPF7Q8N8F6 280 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 OR10H4Q8NGA5 316 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 OR2T27Q8NH04 317 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 RAB40AQ8WXH6 277 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 RNF170Q96K19 258 aa6.76□□□□□ -1.33
VPS53-214ENST00000572607 MYCBPQ99417 103 aaPredicted RBP6.76□□□□□ -1.33
VPS53-214ENST00000572607 TBX5Q99593 518 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms