RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 DOCK10Q96BY6 2186 aa6.92□□□□□ -1.3
VPS39-213ENST00000570062 MPDZO75970 2070 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 IGSF10Q6WRI0 2623 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 A0A0G2JMP0 313 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 A0A0X1KG70 313 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 hCG_38984A0A1B0GV85 526 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 ANKRD30BLA7E2S9 258 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 CTAG2O75638 210 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 RBBP9O75884 186 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 TNFSF13O75888 250 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 KDM4BO94953 1096 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 CYB5AP00167 134 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 NRASP01111 189 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 CGAP01215 116 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 DBHP09172 617 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 PSMB1P20618 241 aaKnown RBP6.91□□□□□ -1.3
VPS39-213ENST00000570062 IGHV1-2P23083 117 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 IL32P24001 234 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 AZGP1P25311 298 aaKnown RBP6.91□□□□□ -1.3
VPS39-213ENST00000570062 PRSS3P35030 304 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 PTGFRP43088 359 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 MAGEB1P43366 347 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 TDGF1P3P51864 188 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 ACTBP60709 375 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 ACTG1P63261 375 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 FAM3AP98173 230 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 MZT1Q08AG7 82 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 KISS1Q15726 138 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 BAK1Q16611 211 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 GFOD2Q3B7J2 385 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 SNAI3Q3KNW1 292 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 ZNF57Q68EA5 555 aaPredicted RBP6.91□□□□□ -1.3
VPS39-213ENST00000570062 TMEM42Q69YG0 159 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 AWAT2Q6E213 333 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 UNQ6494/PRO21346Q6UXR6 183 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 MRGPRGQ86SM5 289 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 ANGPTL5Q86XS5 388 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 ZNF101Q8IZC7 436 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 CISD2Q8N5K1 135 aaKnown RBP6.91□□□□□ -1.3
VPS39-213ENST00000570062 DUSP18Q8NEJ0 188 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 OR4M2Q8NGB6 313 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 OR51D1Q8NGF3 324 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 OR56B1Q8NGI3 324 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 OR5H6Q8NGV6 325 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 ENKURQ8TC29 256 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 SMIM4Q8WVI0 70 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 MUCL1Q96DR8 90 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 BORCS8Q96FH0 119 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 LRRC46Q96FV0 321 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 WBP1Q96G27 269 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 SDHCQ99643 169 aaPredicted RBP6.91□□□□□ -1.3
VPS39-213ENST00000570062 METTL9Q9H1A3 318 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 ATG5Q9H1Y0 275 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 CNTD2Q9H8S5 307 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 ZNF71Q9NQZ8 489 aaPredicted RBP6.91□□□□□ -1.3
VPS39-213ENST00000570062 FAIMQ9NVQ4 179 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 RBFOX1Q9NWB1 397 aaKnown RBP6.91□□□□□ -1.3
VPS39-213ENST00000570062 ZNF224Q9NZL3 707 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 ZNF319Q9P2F9 582 aa6.91□□□□□ -1.3
VPS39-213ENST00000570062 MRPS28Q9Y2Q9 187 aaKnown RBP6.91□□□□□ -1.3
VPS39-213ENST00000570062 MRPS7Q9Y2R9 242 aaKnown RBP6.91□□□□□ -1.3
VPS39-213ENST00000570062 LOC100509620A0A075B734 347 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 FAM240BA0A1B0GVZ2 78 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 A0A1W2PQ09 198 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 OR5H1A6NKK0 313 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 OR5B21A6NL26 309 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 VSTM5A8MXK1 200 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 E9PLN8 166 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 LDLRAD4O15165 306 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 GMDSO60547 372 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 PFDN1O60925 122 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 CA11O75493 328 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 IGKV3-15P01624 115 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 CSTBP04080 98 aaKnown RBP6.9□□□□□ -1.3
VPS39-213ENST00000570062 CSF1P09603 554 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 PATE4P0C8F1 98 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 NAT2P11245 290 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 RAC2P15153 192 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 PPP3CBP16298 524 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 ZNF14P17017 642 aaPredicted RBP6.9□□□□□ -1.3
VPS39-213ENST00000570062 CCNOP22674 350 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 CBX5P45973 191 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 RAG2P55895 527 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 MTCP1P56278 107 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 TAS2R20P59543 309 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 IFITM3Q01628 133 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 SNTB2Q13425 540 aaKnown RBP6.9□□□□□ -1.3
VPS39-213ENST00000570062 P2RY14Q15391 338 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 PNLIPRP3Q17RR3 467 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 C9orf135Q5VTT2 229 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 ASPHD2Q6ICH7 369 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 PLET1Q6UQ28 207 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 GLIPR1L1Q6UWM5 242 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 FBXW12Q6X9E4 464 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 DNM1P46Q6ZS02 220 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 BHLHA15Q7RTS1 189 aaPredicted RBP6.9□□□□□ -1.3
VPS39-213ENST00000570062 NAA40Q86UY6 237 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 MDP1Q86V88 176 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 SAXO1Q8IYX7 474 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 GCNT2Q8N0V5 402 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms