RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 CD200R1LQ6Q8B3 271 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 LYPD6Q86Y78 171 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 PARP16Q8N5Y8 322 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 SEMA6DQ8NFY4 1073 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 TSPAN14Q8NG11 270 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 OR5P3Q8WZ94 311 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 NINJ1Q92982 152 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 PIGTQ969N2 578 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 ITFG2Q969R8 447 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 CHST5Q9GZS9 411 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 CXXC4Q9H2H0 198 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 CHCHD3Q9NX63 227 aaKnown RBP7.86□□□□□ -1.15
VPS35-211ENST00000569950 HHLA2Q9UM44 414 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 PIGLQ9Y2B2 252 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 ZNF281Q9Y2X9 895 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.85□□□□□ -1.151e-8■■□□□ 13.8
VPS35-211ENST00000569950 TRAV8-7A0A075B6U6 113 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 A0A096LNT2 108 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 ZNF816-ZNF321PA0A0X1KG74 233 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 A0A1B0GVI7 797 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 SHISA3A0PJX4 238 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 PQLC2LA1A4F0 135 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 SPRY3O43610 288 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 GPX5O75715 221 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 TFAP2AP05549 437 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 IGFBP3P17936 291 aaPredicted RBP7.85□□□□□ -1.15
VPS35-211ENST00000569950 COL8A2P25067 703 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 GATA4P43694 442 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 CCL8P80075 99 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 MPPED2Q15777 294 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 TSTQ16762 297 aaKnown RBP7.85□□□□□ -1.15
VPS35-211ENST00000569950 FAM209AQ5JX71 171 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 KCTD8Q6ZWB6 473 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 UTS2BQ765I0 119 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 LRRC75A-AS1Q8N1F1 130 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 ZNF676Q8N7Q3 588 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 CSNK2A3Q8NEV1 391 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 OR2Z1Q8NG97 314 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 OR51A2Q8NGJ7 313 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 OR13G1Q8NGZ3 307 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 ITLN1Q8WWA0 313 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 FGGYQ96C11 551 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 ELMOD3Q96FG2 381 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 MEGF10Q96KG7 1140 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 DERL3Q96Q80 235 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 MYCBPQ99417 103 aaPredicted RBP7.85□□□□□ -1.15
VPS35-211ENST00000569950 ADAT1Q9BUB4 502 aaKnown RBP7.85□□□□□ -1.15
VPS35-211ENST00000569950 TLNRD1Q9H1K6 362 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 MS4A5Q9H3V2 200 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 GPR173Q9NS66 373 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 TMEM100Q9NV29 134 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 BEX4Q9NWD9 120 aaPredicted RBP7.85□□□□□ -1.15
VPS35-211ENST00000569950 NDUFB11Q9NX14 153 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 ZDHHC8Q9ULC8 765 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 CSPG4Q6UVK1 2322 aa7.85□□□□□ -1.15
VPS35-211ENST00000569950 TEP1Q99973 2627 aaKnown RBP7.84□□□□□ -1.15
VPS35-211ENST00000569950 F8P00451 2351 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 MTORP42345 2549 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 ARHGAP32A7KAX9 2087 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 A0A087WXM4 84 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 IGHV3-64DA0A0J9YX35 117 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 VSTM5A8MXK1 200 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.84□□□□□ -1.15
VPS35-211ENST00000569950 F12P00748 615 aaPredicted RBP7.84□□□□□ -1.15
VPS35-211ENST00000569950 CD37P11049 281 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 ADRA2CP18825 462 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 CRYBB2P43320 205 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 SOX2P48431 317 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 ALDH3B2P48448 385 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 EFNA4P52798 201 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 FABP5Q01469 135 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 RIPPLY1Q0D2K3 151 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 ZNF154Q13106 437 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 NEDD8Q15843 81 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 Q499Y3 187 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 YIF1BQ5BJH7 314 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 ARMCX4Q5H9R4 360 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 CEP78Q5JTW2 689 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 CLVS2Q5SYC1 327 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 PRAMEF6Q5VXH4 476 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 SVOPQ8N4V2 548 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 ZNF525Q8N782 197 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 CCDC54Q8NEL0 328 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 GPR148Q8TDV2 347 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 PIGCQ92535 297 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 OR2V2Q96R30 315 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 OR14A2Q96R54 314 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 GFI1Q99684 422 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 VRK1Q99986 396 aaPredicted RBP7.84□□□□□ -1.15
VPS35-211ENST00000569950 PAPOLGQ9BWT3 736 aaKnown RBP7.84□□□□□ -1.15
VPS35-211ENST00000569950 GCM1Q9NP62 436 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 DYNLRB1Q9NP97 96 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 CYSLTR2Q9NS75 346 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 IL19Q9UHD0 177 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 ENPP5Q9UJA9 477 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 MPC1Q9Y5U8 109 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 PMF1-BGLAPU3KQ54 211 aa7.84□□□□□ -1.15
VPS35-211ENST00000569950 DOCK11Q5JSL3 2073 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 PLSCR5A0PG75 271 aa7.83□□□□□ -1.16
VPS35-211ENST00000569950 ANKRD30BLA7E2S9 258 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms