RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 RNF170Q96K19 258 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 PCGF1Q9BSM1 259 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 RASSF4Q9H2L5 321 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 IKZF2Q9UKS7 526 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 A0A0U1RQV5 110 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 DNAJC9-AS1A6NH13 148 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 SLC22A31A6NKX4 558 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 P2RY10O00398 339 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 DVL1O14640 695 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 PRKYO43930 277 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 MITFO75030 526 aaPredicted RBP13.98□□□□□ -0.17
CLK3-210ENST00000563112 CIB2O75838 187 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 ATP6V1B1P15313 513 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 ACKR3P25106 362 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 RIDAP52758 137 aaKnown RBP13.98□□□□□ -0.17
CLK3-210ENST00000563112 ROM1Q03395 351 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 METTL11BQ5VVY1 283 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 SLX4IPQ5VYV7 408 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 NXNL2Q5VZ03 156 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 SLC36A1Q7Z2H8 476 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 THAP5Q7Z6K1 395 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 ZNF679Q8IYX0 411 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 TCEANCQ8N8B7 351 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 OR10Z1Q8NGY1 313 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 ST8SIA4Q92187 359 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 SLC25A28Q96A46 364 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 C12orf43Q96C57 262 aaKnown RBP13.98□□□□□ -0.17
CLK3-210ENST00000563112 DUS3LQ96G46 650 aaKnown RBP13.98□□□□□ -0.17
CLK3-210ENST00000563112 LYZL4Q96KX0 146 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 ZNF48Q96MX3 618 aaPredicted RBP13.98□□□□□ -0.17
CLK3-210ENST00000563112 DUX5Q96PT3 197 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 OR8B4Q96RC9 309 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 MNTQ99583 582 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 PKP2Q99959 881 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 GABARAPL1Q9H0R8 117 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 TLNRD1Q9H1K6 362 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 PPP1R3EQ9H7J1 279 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 DNAJB11Q9UBS4 358 aa13.98□□□□□ -0.17
CLK3-210ENST00000563112 ZNF816-ZNF321PA0A0X1KG74 233 aa13.97□□□□□ -0.17
CLK3-210ENST00000563112 SRRM5B3KS81 715 aa13.97□□□□□ -0.17
CLK3-210ENST00000563112 PSMD9O00233 223 aa13.97□□□□□ -0.17
CLK3-210ENST00000563112 TOX4O94842 621 aa13.97□□□□□ -0.17
CLK3-210ENST00000563112 FOXL1Q12952 345 aa13.97□□□□□ -0.17
CLK3-210ENST00000563112 KDM4DQ6B0I6 523 aa13.97□□□□□ -0.17
CLK3-210ENST00000563112 BTN2A1Q7KYR7 527 aa13.97□□□□□ -0.17
CLK3-210ENST00000563112 AMIGO2Q86SJ2 522 aa13.97□□□□□ -0.17
CLK3-210ENST00000563112 TMEM163Q8TC26 289 aa13.97□□□□□ -0.17
CLK3-210ENST00000563112 RPL3LQ92901 407 aaKnown RBP13.97□□□□□ -0.17
CLK3-210ENST00000563112 ZDHHC16Q969W1 377 aa13.97□□□□□ -0.17
CLK3-210ENST00000563112 CCL13Q99616 98 aa13.97□□□□□ -0.17
CLK3-210ENST00000563112 PBOV1Q9GZY1 135 aa13.97□□□□□ -0.17
CLK3-210ENST00000563112 SMURF1Q9HCE7 757 aa13.97□□□□□ -0.17
CLK3-210ENST00000563112 FAM206AQ9NX38 181 aa13.97□□□□□ -0.17
CLK3-210ENST00000563112 ZAR1LA6NP61 321 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 ZNF670-ZNF695F2Z2N8 137 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 CLDN34H7C241 214 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 GPR37O15354 613 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 NDUFB3O43676 98 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 HKR1P10072 659 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 RIPPLY1Q0D2K3 151 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 WDR38Q5JTN6 314 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 AADACL4Q5VUY2 407 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 C12orf73Q69YU5 71 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 ZNF322Q6U7Q0 402 aaPredicted RBP13.96□□□□□ -0.17
CLK3-210ENST00000563112 BRD3OSQ6XYD6 125 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 GID4Q8IVV7 300 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 SLC35F2Q8IXU6 374 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 SCCPDHQ8NBX0 429 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 LRTOMTQ8WZ04 291 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 WDFY2Q96P53 400 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 IL4I1Q96RQ9 567 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 TTTY10Q9BZA0 68 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 HAO2Q9NYQ3 351 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 GTF2A1LQ9UNN4 478 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 COPS3Q9UNS2 423 aa13.96□□□□□ -0.17
CLK3-210ENST00000563112 NKX6-3A6NJ46 265 aa13.95□□□□□ -0.18
CLK3-210ENST00000563112 MTRF1O75570 445 aaKnown RBP13.95□□□□□ -0.18
CLK3-210ENST00000563112 RNASE1P07998 156 aaKnown RBP13.95□□□□□ -0.18
CLK3-210ENST00000563112 GMFBP60983 142 aa13.95□□□□□ -0.18
CLK3-210ENST00000563112 CXCR4P61073 352 aa13.95□□□□□ -0.18
CLK3-210ENST00000563112 GNG3P63215 75 aa13.95□□□□□ -0.18
CLK3-210ENST00000563112 EFNB1P98172 346 aa13.95□□□□□ -0.18
CLK3-210ENST00000563112 PDCD1Q15116 288 aa13.95□□□□□ -0.18
CLK3-210ENST00000563112 SLC9A3R2Q15599 337 aa13.95□□□□□ -0.18
CLK3-210ENST00000563112 AWAT1Q58HT5 328 aa13.95□□□□□ -0.18
CLK3-210ENST00000563112 LRRC10Q5BKY1 277 aa13.95□□□□□ -0.18
CLK3-210ENST00000563112 FAM76BQ5HYJ3 339 aa13.95□□□□□ -0.18
CLK3-210ENST00000563112 BCDIN3DQ7Z5W3 292 aaKnown RBP13.95□□□□□ -0.18
CLK3-210ENST00000563112 OR51E1Q8TCB6 317 aa13.95□□□□□ -0.18
CLK3-210ENST00000563112 CENPNQ96H22 339 aaPredicted RBP13.95□□□□□ -0.18
CLK3-210ENST00000563112 FAM71F1Q96KD3 344 aaPredicted RBP13.95□□□□□ -0.18
CLK3-210ENST00000563112 DNTTIP1Q9H147 329 aa13.95□□□□□ -0.18
CLK3-210ENST00000563112 CNTD2Q9H8S5 307 aa13.95□□□□□ -0.18
CLK3-210ENST00000563112 GPR84Q9NQS5 396 aa13.95□□□□□ -0.18
CLK3-210ENST00000563112 NUFIP1Q9UHK0 495 aaKnown RBP13.95□□□□□ -0.18
CLK3-210ENST00000563112 RPUSD1Q9UJJ7 312 aaKnown RBP13.95□□□□□ -0.18
CLK3-210ENST00000563112 LOC110117498-PIK3R3F6TDL0 507 aa13.94□□□□□ -0.18
CLK3-210ENST00000563112 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.94□□□□□ -0.18
CLK3-210ENST00000563112 M0R129 80 aa13.94□□□□□ -0.18
CLK3-210ENST00000563112 SFTPBP07988 381 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms