RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 TMPRSS2O15393 492 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 PTP4A3O75365 173 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 PRB1P04280 392 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 CHRNB4P30926 498 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 CRYBA2P53672 197 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 GGTLC2Q14390 218 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 CCDC58Q4VC31 144 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 RBMS3Q6XE24 437 aaKnown RBP8.11□□□□□ -1.11
VPS39-205ENST00000562258 STAC2Q6ZMT1 411 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 ANKRD13BQ86YJ7 626 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 BEST4Q8NFU0 473 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 FAM57AQ8TBR7 257 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 ADAMTS17Q8TE56 1095 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 THAP7Q9BT49 309 aaPredicted RBP8.11□□□□□ -1.11
VPS39-205ENST00000562258 FXYD6Q9H0Q3 95 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 TBCCD1Q9NVR7 557 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 AMDHD2Q9Y303 409 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 ACSM4P0C7M7 580 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 ARHGDIBP52566 201 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 OR2B11Q5JQS5 317 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 DTX1Q86Y01 620 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 NKAIN3Q8N8D7 197 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 RNF128Q8TEB7 428 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 NUDCD2Q8WVJ2 157 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 SLC23A1Q9UHI7 598 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 ZNF221Q9UK13 617 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 RNF150Q9ULK6 438 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 PCDHGA9Q9Y5G4 932 aaKnown RBP8.1□□□□□ -1.11
VPS39-205ENST00000562258 DSPPQ9NZW4 1301 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 CDRT15L2A8MXV6 281 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 M0QYG6 137 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 SPINT2O43291 252 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 THY1P04216 161 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 GP2P55259 537 aaKnown RBP8.1□□□□□ -1.11
VPS39-205ENST00000562258 LSM6P62312 80 aaKnown RBP8.1□□□□□ -1.11
VPS39-205ENST00000562258 FOXF2Q12947 444 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 CD300LDQ6UXZ3 194 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 BPIFB2Q8N4F0 458 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 NICN1Q9BSH3 213 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 MS4A5Q9H3V2 200 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 FGF20Q9NP95 211 aaPredicted RBP8.1□□□□□ -1.11
VPS39-205ENST00000562258 SMCO3A2RU48 225 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 TRIM64A6NGJ6 449 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 LRRC3CA6NJW4 275 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 SCGNO76038 276 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 NGFP01138 241 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 MGMTP16455 207 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 ALDH3B1P43353 468 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 KISS1Q15726 138 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 C2orf76Q3KRA6 126 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 ACSF3Q4G176 576 aaPredicted RBP8.1□□□□□ -1.11
VPS39-205ENST00000562258 FBXW12Q6X9E4 464 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 OR13F1Q8NGS4 319 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 AMELYQ99218 206 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 PPA2Q9H2U2 334 aa8.1□□□□□ -1.11
VPS39-205ENST00000562258 ABCA12Q86UK0 2595 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 XIRP2A4UGR9 3374 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 SULT1B1O43704 296 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 TUSC2O75896 110 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 MT-ND4P03905 459 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 PTHLHP12272 177 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 AGTR1P30556 359 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 AKIRIN2Q53H80 203 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 RNFT1Q5M7Z0 435 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 FAM27BQ5VT28 67 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 ADGRE4PQ86SQ3 457 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 WDYHV1Q96HA8 205 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 OCSTAMPQ9BR26 566 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 CHODLQ9H9P2 273 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 TMEM165Q9HC07 324 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 NUDT15Q9NV35 164 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 SPRR3Q9UBC9 169 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 PLEKHB1Q9UF11 243 aaPredicted RBP8.09□□□□□ -1.11
VPS39-205ENST00000562258 CEPT1Q9Y6K0 416 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 LOC100289279A0A1B0GTE1 492 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 A0A1B0GVG6 124 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 CYTIPO60759 359 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 DHRS3O75911 302 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 RPS4Y1P22090 263 aaKnown RBP8.09□□□□□ -1.11
VPS39-205ENST00000562258 MTNR1BP49286 362 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 SMIM21Q3B7S5 101 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 PRAMEF6Q5VXH4 476 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 ZNF517Q6ZMY9 492 aaPredicted RBP8.09□□□□□ -1.11
VPS39-205ENST00000562258 SLC36A1Q7Z2H8 476 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 OR4M1Q8NGD0 313 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 RAB1CQ92928 201 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 ZDHHC16Q969W1 377 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 PSD2Q9BQI7 771 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 OCEL1Q9H607 264 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 TAS2R8Q9NYW2 309 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 NUP210Q8TEM1 1887 aaPredicted RBP8.09□□□□□ -1.11
VPS39-205ENST00000562258 AQP7O14520 342 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 NDUFB3O43676 98 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 SEMA7AO75326 666 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 ADRA2AP08913 450 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 CST2P09228 141 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 ZNF708P17019 499 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 FUT6P51993 359 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 AADACL3Q5VUY0 350 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 OR51A4Q8NGJ6 313 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms