RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 OR5T2Q8NGG2 359 aa15.65■□□□□ 0.1
VPS35-202ENST00000561713 OR8B12Q8NGG6 310 aa15.65■□□□□ 0.1
VPS35-202ENST00000561713 OR52H1Q8NGJ2 320 aa15.65■□□□□ 0.1
VPS35-202ENST00000561713 THEM6Q8WUY1 208 aa15.65■□□□□ 0.1
VPS35-202ENST00000561713 GATAD2BQ8WXI9 593 aa15.65■□□□□ 0.1
VPS35-202ENST00000561713 UBE2FQ969M7 185 aa15.65■□□□□ 0.1
VPS35-202ENST00000561713 ITPKCQ96DU7 683 aa15.65■□□□□ 0.1
VPS35-202ENST00000561713 LYZL4Q96KX0 146 aa15.65■□□□□ 0.1
VPS35-202ENST00000561713 WDR13Q9H1Z4 485 aa15.65■□□□□ 0.1
VPS35-202ENST00000561713 RPUSD1Q9UJJ7 312 aaKnown RBP15.65■□□□□ 0.1
VPS35-202ENST00000561713 IGHV1-69DA0A0B4J2H0 117 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 ARRDC5A6NEK1 342 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 ZNF850A8MQ14 1090 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 PSMD9O00233 223 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 GNGT2O14610 69 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 FAM107AO95990 144 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 IGHV1-69P01742 117 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 IGHV4-59P01825 116 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 LYNP07948 512 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 AMY2BP19961 511 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 PRKACGP22612 351 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 PSMA6P60900 246 aaKnown RBP15.64■□□□□ 0.09
VPS35-202ENST00000561713 RPS7P62081 194 aaKnown RBP15.64■□□□□ 0.09
VPS35-202ENST00000561713 MICBQ29980 383 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 DMRTC1Q5HYR2 192 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 TMEM236Q5W0B7 351 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 CPOQ8IVL8 374 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 TMEM86BQ8N661 226 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 SCCPDHQ8NBX0 429 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 OTOSQ8NHW6 89 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 HPSE2Q8WWQ2 592 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 FAM71F1Q96KD3 344 aaPredicted RBP15.64■□□□□ 0.09
VPS35-202ENST00000561713 RNPEPL1Q9HAU8 725 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 SIRT7Q9NRC8 400 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 ACOXLQ9NUZ1 547 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 RNF114Q9Y508 228 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 POMT1Q9Y6A1 747 aa15.64■□□□□ 0.09
VPS35-202ENST00000561713 A0A1W2PRD5 423 aa15.63■□□□□ 0.09
VPS35-202ENST00000561713 A0A1W2PRF3 423 aa15.63■□□□□ 0.09
VPS35-202ENST00000561713 A0A1W2PRM7 423 aa15.63■□□□□ 0.09
VPS35-202ENST00000561713 NDUFA2O43678 99 aa15.63■□□□□ 0.09
VPS35-202ENST00000561713 MRPL3P09001 348 aaKnown RBP15.63■□□□□ 0.09
VPS35-202ENST00000561713 HCCSP53701 268 aa15.63■□□□□ 0.09
VPS35-202ENST00000561713 KLRD1Q13241 179 aa15.63■□□□□ 0.09
VPS35-202ENST00000561713 STUMQ69YW2 141 aa15.63■□□□□ 0.09
VPS35-202ENST00000561713 KCTD8Q6ZWB6 473 aa15.63■□□□□ 0.09
VPS35-202ENST00000561713 CSNK2A3Q8NEV1 391 aa15.63■□□□□ 0.09
VPS35-202ENST00000561713 LINC01006Q8NI28 216 aa15.63■□□□□ 0.09
VPS35-202ENST00000561713 MICU1Q9BPX6 476 aa15.63■□□□□ 0.09
VPS35-202ENST00000561713 RTL8AQ9BWD3 113 aa15.63■□□□□ 0.09
VPS35-202ENST00000561713 SP140LQ9H930 580 aa15.63■□□□□ 0.09
VPS35-202ENST00000561713 KAAG1Q9UBP8 84 aa15.63■□□□□ 0.09
VPS35-202ENST00000561713 LRP12Q9Y561 859 aa15.63■□□□□ 0.09
VPS35-202ENST00000561713 ANXA2P2A6NMY6 339 aa15.62■□□□□ 0.09
VPS35-202ENST00000561713 PRR32B1ATL7 298 aa15.62■□□□□ 0.09
VPS35-202ENST00000561713 M0R129 80 aa15.62■□□□□ 0.09
VPS35-202ENST00000561713 AKR7A2O43488 359 aa15.62■□□□□ 0.09
VPS35-202ENST00000561713 APOC1P02654 83 aa15.62■□□□□ 0.09
VPS35-202ENST00000561713 LIPFP07098 398 aa15.62■□□□□ 0.09
VPS35-202ENST00000561713 CFL1P23528 166 aaKnown RBP15.62■□□□□ 0.09
VPS35-202ENST00000561713 PDCD1Q15116 288 aa15.62■□□□□ 0.09
VPS35-202ENST00000561713 TAF9Q16594 264 aa15.62■□□□□ 0.09
VPS35-202ENST00000561713 SPATA24Q86W54 205 aa15.62■□□□□ 0.09
VPS35-202ENST00000561713 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.62■□□□□ 0.09
VPS35-202ENST00000561713 PIP4P2Q8N4L2 257 aa15.62■□□□□ 0.09
VPS35-202ENST00000561713 SSMEM1Q8WWF3 244 aa15.62■□□□□ 0.09
VPS35-202ENST00000561713 H1FXQ92522 213 aaKnown RBP15.62■□□□□ 0.09
VPS35-202ENST00000561713 PIGCQ92535 297 aa15.62■□□□□ 0.09
VPS35-202ENST00000561713 TLNRD1Q9H1K6 362 aa15.62■□□□□ 0.09
VPS35-202ENST00000561713 ELL3Q9HB65 397 aaPredicted RBP15.62■□□□□ 0.09
VPS35-202ENST00000561713 TIPRLO75663 272 aa15.61■□□□□ 0.09
VPS35-202ENST00000561713 TSPAN15O95858 294 aa15.61■□□□□ 0.09
VPS35-202ENST00000561713 OSMP13725 252 aa15.61■□□□□ 0.09
VPS35-202ENST00000561713 MUC1P15941 1255 aaPredicted RBP15.61■□□□□ 0.09
VPS35-202ENST00000561713 SLC2A5P22732 501 aa15.61■□□□□ 0.09
VPS35-202ENST00000561713 IL5RAQ01344 420 aa15.61■□□□□ 0.09
VPS35-202ENST00000561713 APOFQ13790 326 aa15.61■□□□□ 0.09
VPS35-202ENST00000561713 PNKDQ8N490 385 aa15.61■□□□□ 0.09
VPS35-202ENST00000561713 OR5P3Q8WZ94 311 aa15.61■□□□□ 0.09
VPS35-202ENST00000561713 DYRK2Q92630 601 aa15.61■□□□□ 0.09
VPS35-202ENST00000561713 RGCCQ9H4X1 137 aa15.61■□□□□ 0.09
VPS35-202ENST00000561713 ZNF391Q9UJN7 358 aa15.61■□□□□ 0.09
VPS35-202ENST00000561713 NKX6-3A6NJ46 265 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 SLC22A31A6NKX4 558 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 AQP12BA6NM10 295 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 PRODHO43272 600 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 NDUFB3O43676 98 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 GPR137BO60478 399 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 FKBP6O75344 327 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 CLPXO76031 633 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 ECDO95905 644 aaPredicted RBP15.6■□□□□ 0.09
VPS35-202ENST00000561713 PROK1P58294 105 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 CBX1P83916 185 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 FLOT2Q14254 428 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 GK3PQ14409 553 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 CDONQ4KMG0 1287 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 CEP78Q5JTW2 689 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 SLC36A1Q7Z2H8 476 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 COMMD2Q86X83 199 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 AQP12AQ8IXF9 295 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms