RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 ZNF546Q86UE3 836 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 CD163Q86VB7 1156 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 OR4S1Q8NGB4 309 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 MAFAQ8NHW3 353 aaPredicted RBP6.39□□□□□ -1.39
VPS13C-206ENST00000558338 RBPMSQ93062 196 aaKnown RBP6.39□□□□□ -1.39
VPS13C-206ENST00000558338 S100A13Q99584 98 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 CHST5Q9GZS9 411 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 PLSCR4Q9NRQ2 329 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 ZNF391Q9UJN7 358 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 CACNA1CQ13936 2221 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 DNAH14Q0VDD8 3507 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 KIAA1549Q9HCM3 1950 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 TRAV14DV4A0A0A6YYC5 116 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 A0A0B4J2A0 478 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 OR5H14A6NHG9 310 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 CEACAM18A8MTB9 384 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 SERPINE3A8MV23 424 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 M0R135 149 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 MFNGO00587 321 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 SSX5O60225 188 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 ZIC3O60481 467 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 CRTAPO75718 401 aaPredicted RBP6.39□□□□□ -1.39
VPS13C-206ENST00000558338 WDPCPO95876 746 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 HPP00738 406 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 CST2P09228 141 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 ZP3P21754 424 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 ENPP1P22413 925 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 CPT2P23786 658 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 GRNP28799 593 aaKnown RBP6.39□□□□□ -1.39
VPS13C-206ENST00000558338 MPGP29372 298 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 RAC3P60763 192 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 OC90Q02509 493 aaPredicted RBP6.39□□□□□ -1.39
VPS13C-206ENST00000558338 SCRN3Q0VDG4 424 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 PPP1R1AQ13522 171 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 ARFRP1Q13795 201 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 RAB35Q15286 201 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 DCAF12Q5T6F0 453 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 NSUN5P2Q63ZY6 315 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 C11orf87Q6NUJ2 197 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 DRAM2Q6UX65 266 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 HOGA1Q86XE5 327 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 PDZD9Q8IXQ8 264 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 C20orf196Q8IYI0 205 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 GPR137CQ8N3F9 429 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 KCNRGQ8N5I3 272 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 OR5H2Q8NGV7 314 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 SNIP1Q8TAD8 396 aaKnown RBP6.39□□□□□ -1.39
VPS13C-206ENST00000558338 THAP6Q8TBB0 222 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 FBXW5Q969U6 566 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 NABP1Q96AH0 204 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 SPSB1Q96BD6 273 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 CMBLQ96DG6 245 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 PHYHIPLQ96FC7 376 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 ZNF799Q96GE5 643 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 C1orf147Q96MC9 270 aaPredicted RBP6.39□□□□□ -1.39
VPS13C-206ENST00000558338 JSRP1Q96MG2 331 aaPredicted RBP6.39□□□□□ -1.39
VPS13C-206ENST00000558338 DHRS9Q9BPW9 319 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 TM2D1Q9BX74 207 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 SLC25A32Q9H2D1 315 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 AKIRIN1Q9H9L7 192 aaPredicted RBP6.39□□□□□ -1.39
VPS13C-206ENST00000558338 PROK2Q9HC23 129 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 ZNF224Q9NZL3 707 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 SHPKQ9UHJ6 478 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 KCNK7Q9Y2U2 307 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 MRPS18CQ9Y3D5 142 aaKnown RBP6.39□□□□□ -1.39
VPS13C-206ENST00000558338 CABIN1Q9Y6J0 2220 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 ASCC3Q8N3C0 2202 aaKnown RBP6.38□□□□□ -1.39
VPS13C-206ENST00000558338 A0A0A6YYD4 124 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 WIPF3A6NGB9 483 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 B8ZZF3 427 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 KRBOX1C9JBD0 128 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 F5H5K5 113 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 LINC01387J3KSC0 135 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 TNFSF11O14788 317 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 BCL2L11O43521 198 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 NMBP08949 121 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 ZNF883P0CG24 379 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 CCL4P13236 92 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 EDN3P14138 238 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 AMY2BP19961 511 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 ACP1P24666 158 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 FPR2P25090 351 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 PTGFRP43088 359 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 CNN3Q15417 329 aaKnown RBP6.38□□□□□ -1.39
VPS13C-206ENST00000558338 SURF2Q15527 256 aaPredicted RBP6.38□□□□□ -1.39
VPS13C-206ENST00000558338 KISS1Q15726 138 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 PLEKHN1Q494U1 663 aaPredicted RBP6.38□□□□□ -1.39
VPS13C-206ENST00000558338 TMEM128Q5BJH2 165 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 PDSS1Q5T2R2 415 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 FAM27BQ5VT28 67 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 SIGIRRQ6IA17 410 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 OR52W1Q6IF63 320 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 ACOT7LQ6ZUV0 252 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 SLC16A14Q7RTX9 510 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 FAM89BQ8N5H3 189 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 GVQW1Q8N7I0 195 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 TMEM185AQ8NFB2 350 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 OR51T1Q8NGJ9 327 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 TERB2Q8NHR7 220 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 CPT1CQ8TCG5 803 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms