RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	MSX2	P35548	267 aa	Predicted RBP	10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	RPS27	P42677	84 aa	Known RBP	10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	BLMH	Q13867	455 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	TAF13	Q15543	124 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	LY6E	Q16553	131 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	NSUN5P1	Q3KNT7	163 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	VAX1	Q5SQQ9	334 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	WDR82	Q6UXN9	313 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	SDR9C7	Q8NEX9	313 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	OR5T2	Q8NGG2	359 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	OR51G2	Q8NGK0	314 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	OR4C15	Q8NGM1	316 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	OR52J3	Q8NH60	311 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	FANK1	Q8TC84	345 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	SPSB4	Q96A44	273 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	SEH1L	Q96EE3	360 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	KCNJ15	Q99712	375 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	COPS4	Q9BT78	406 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	MEGF9	Q9H1U4	602 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	OR52D1	Q9H346	318 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	FN3K	Q9H479	309 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	TOR3A	Q9H497	397 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	RANBP3	Q9H6Z4	567 aa	Predicted RBP	10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	RAB18	Q9NP72	206 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	CENPM	Q9NSP4	180 aa		10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	10.33	□□□□□ -0.76
SHMT2-223	ENST00000556689	ANKRD65	E5RJM6	399 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	XRCC2	O43543	280 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	FKBP6	O75344	327 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	SLC2A1	P11166	492 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	ATP6V1B2	P21281	511 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	POU1F1	P28069	291 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	PRKX	P51817	358 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	ACTR3	P61158	418 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	CSNK2B	P67870	215 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	KPNB1	Q14974	876 aa	Known RBP	10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	SLC35F1	Q5T1Q4	408 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	DCXR	Q7Z4W1	244 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	WDR86	Q86TI4	376 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	LYG1	Q8N1E2	194 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	CYB561A3	Q8NBI2	242 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	C17orf50	Q8WW18	174 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	MED30	Q96HR3	178 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	C7orf34	Q96L11	122 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	DNTTIP1	Q9H147	329 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	MAGIX	Q9H6Y5	334 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	DCAF13	Q9NV06	445 aa	Known RBP	10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	HAO2	Q9NYQ3	351 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689		V9GYQ6	96 aa		10.32	□□□□□ -0.76
SHMT2-223	ENST00000556689	PLXNB1	O43157	2135 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	NBEAL2	Q6ZNJ1	2754 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689		A0A1W2PQ09	198 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	TVP23A	A6NH52	213 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	CDIPT	O14735	213 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	DIRAS1	O95057	198 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	RAP2A	P10114	183 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	SELL	P14151	372 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	PYCR1	P32322	319 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	SMIM11A	P58511	58 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	FAM3A	P98173	230 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	AANAT	Q16613	207 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	LRRC75B	Q2VPJ9	315 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	STUM	Q69YW2	141 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	CRIP3	Q6Q6R5	217 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	SLC16A9	Q7RTY1	509 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	ZDHHC21	Q8IVQ6	265 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	PROKR2	Q8NFJ6	384 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	OR5D13	Q8NGL4	314 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	RORB	Q92753	470 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	UTP4	Q969X6	686 aa	Known RBP	10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	SGK3	Q96BR1	496 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	DUS3L	Q96G46	650 aa	Known RBP	10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	DHRS1	Q96LJ7	313 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	FUZ	Q9BT04	418 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	NPFFR1	Q9GZQ6	430 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	SNTG1	Q9NSN8	517 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	SLC25A10	Q9UBX3	287 aa	Predicted RBP	10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	ZNF391	Q9UJN7	358 aa		10.31	□□□□□ -0.76
SHMT2-223	ENST00000556689	NKX6-3	A6NJ46	265 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689		H0YAE9	185 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	TBX1	O43435	398 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	FBXO24	O75426	580 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	FABP3	P05413	133 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	NDUFB7	P17568	137 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	CAV3	P56539	151 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	GMFB	P60983	142 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	TIGD6	Q17RP2	521 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	ZNF788	Q6ZQV5	615 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	OR4F17	Q8NGA8	305 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	OR2T4	Q8NH00	348 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	PHF21A	Q96BD5	680 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	R3HDM4	Q96D70	268 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	SLAMF6	Q96DU3	332 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	PYURF	Q96I23	114 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	OR4F4	Q96R69	305 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	DDO	Q99489	341 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	MICU1	Q9BPX6	476 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	TLNRD1	Q9H1K6	362 aa		10.3	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms