RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 MRGPRX4Q96LA9 322 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 PLA2G3Q9NZ20 509 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 UBE2J1Q9Y385 318 aaPredicted RBP13.17□□□□□ -0.3
CUX1-215ENST00000556210 IGHV5-10-1A0A0J9YXX1 117 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 A0A1W2PQM1 296 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 LIPT2A6NK58 231 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 MS4A18H0YCH9 400 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 MED6O75586 246 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 APOC1P02654 83 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 MS4A18Q3C1V0 323 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 OR5L1Q8NGL2 311 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 OR10Z1Q8NGY1 313 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 MRPL33O75394 65 aaKnown RBP13.17□□□□□ -0.3
CUX1-215ENST00000556210 DIRAS3O95661 229 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 SNRNP70P08621 437 aaKnown RBP13.17□□□□□ -0.3
CUX1-215ENST00000556210 RGS19P49795 217 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 ASCL1P50553 236 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 ATPAF1Q5TC12 328 aaPredicted RBP13.17□□□□□ -0.3
CUX1-215ENST00000556210 C5orf46Q6UWT4 87 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 TMPPEQ6ZT21 453 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 P4HA3Q7Z4N8 544 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 CATSPERDQ86XM0 798 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 COL4A4P53420 1690 aaPredicted RBP13.17□□□□□ -0.3
CUX1-215ENST00000556210 ZNF98A6NK75 572 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 PPT1P50897 306 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 LINC00114Q6XXX2 140 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 ADAD2Q8NCV1 583 aaKnown RBP13.17□□□□□ -0.3
CUX1-215ENST00000556210 SECTM1Q8WVN6 248 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 IGLV1-36A0A0B4J1U3 117 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 OR6C76A6NM76 312 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 ADH6P28332 368 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 EPHA8P29322 1005 aaPredicted RBP13.16□□□□□ -0.3
CUX1-215ENST00000556210 VAMP2P63027 116 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 NOXO1Q8NFA2 376 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 FNDC9Q8TBE3 224 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 MRPS24Q96EL2 167 aaKnown RBP13.16□□□□□ -0.3
CUX1-215ENST00000556210 OXGR1Q96P68 337 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 ZNF2Q9BSG1 426 aaPredicted RBP13.16□□□□□ -0.3
CUX1-215ENST00000556210 NDRG3Q9UGV2 375 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 NPTNQ9Y639 398 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 PRSS44E7EML9 344 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 OR2A4O95047 310 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 SYNGR4O95473 234 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 FGF2P09038 288 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 VSIG8P0DPA2 414 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 PLP2Q04941 152 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 MAML2Q8IZL2 1156 aaPredicted RBP13.16□□□□□ -0.3
CUX1-215ENST00000556210 ZNF611Q8N823 705 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 DYRK2Q92630 601 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 THOC3Q96J01 351 aaKnown RBP13.16□□□□□ -0.3
CUX1-215ENST00000556210 OR2A7Q96R45 310 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 OR2M5A3KFT3 312 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 DHHO43323 396 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 XRCC2O43543 280 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 TTRP02766 147 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 GALNSP34059 522 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 KISS1Q15726 138 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 ZNF774Q6NX45 483 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 LPCAT3Q6P1A2 487 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 HSD17B11Q8NBQ5 300 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 UQCC2Q9BRT2 126 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.16□□□□□ -0.33e-6■■□□□ 13.5
CUX1-215ENST00000556210 ABI3Q9P2A4 366 aa13.16□□□□□ -0.3
CUX1-215ENST00000556210 PLXNA2O75051 1894 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 ZFHX2Q9C0A1 2572 aaPredicted RBP13.15□□□□□ -0.3
CUX1-215ENST00000556210 A0A1W2PPC1 479 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 DXOO77932 396 aaKnown RBP13.15□□□□□ -0.3
CUX1-215ENST00000556210 F12P00748 615 aaPredicted RBP13.15□□□□□ -0.3
CUX1-215ENST00000556210 RAB6AP20340 208 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 UNQ9370/PRO34162Q6UXP9 181 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 HDHD3Q9BSH5 251 aaPredicted RBP13.15□□□□□ -0.3
CUX1-215ENST00000556210 IFT22Q9H7X7 185 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 PET100P0DJ07 73 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 PSMB6P28072 239 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 EIF1P41567 113 aaKnown RBP13.15□□□□□ -0.3
CUX1-215ENST00000556210 AKR1C3P42330 323 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 FHL1Q13642 323 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 TSPO2Q5TGU0 170 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 MRPL21Q7Z2W9 205 aaKnown RBP13.15□□□□□ -0.3
CUX1-215ENST00000556210 BAP18Q8IXM2 172 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 ZNF285Q96NJ3 590 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 SLCO5A1Q9H2Y9 848 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 KLK13Q9UKR3 277 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 KCNS2Q9ULS6 477 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 TMEM200CA6NKL6 621 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 A6NLC8 198 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 CEACAM16Q2WEN9 425 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 DCAF12Q5T6F0 453 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 NANPQ8TBE9 248 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 FAAP24Q9BTP7 215 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 MFRPQ9BY79 579 aa13.15□□□□□ -0.3
CUX1-215ENST00000556210 SPTBN1Q01082 2364 aaKnown RBP13.15□□□□□ -0.31
CUX1-215ENST00000556210 A8MXK9 166 aa13.14□□□□□ -0.31
CUX1-215ENST00000556210 MSX1P28360 303 aa13.14□□□□□ -0.31
CUX1-215ENST00000556210 CLINT1Q14677 625 aa13.14□□□□□ -0.31
CUX1-215ENST00000556210 TSC22D1Q15714 1073 aa13.14□□□□□ -0.31
CUX1-215ENST00000556210 MPPED2Q15777 294 aa13.14□□□□□ -0.31
CUX1-215ENST00000556210 LINC00518Q8N0U6 118 aa13.14□□□□□ -0.31
CUX1-215ENST00000556210 OR5AS1Q8N127 324 aa13.14□□□□□ -0.31
CUX1-215ENST00000556210 APCDD1LQ8NCL9 501 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms