RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 SFXN3Q9BWM7 321 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 TBL1XR1Q9BZK7 514 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 TMEM106BQ9NUM4 274 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 UNC79Q9P2D8 2635 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 PHLPP2Q6ZVD8 1323 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 LTBP2Q14767 1821 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 DYSFO75923 2080 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 SPATA31E1Q6ZUB1 1445 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 CACNA1GO43497 2377 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 CCL15-CCL14A0A0B4J2E2 113 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 C9JVG2 144 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 SLC16A7O60669 478 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 SLC19A2O60779 497 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 HUS1O60921 280 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 PRB1P04280 392 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 OR5AC1P0C628 307 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 ARL14EPLP0DKL9 152 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 BCKDHBP21953 392 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 FABP6P51161 128 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 DEFB103AP81534 67 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 CCL15Q16663 113 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 EIF4E3Q8N5X7 224 aaKnown RBP1.17□□□□□ -2.22
SCFD1-216ENST00000555550 TTC29Q8NA56 475 aaPredicted RBP1.17□□□□□ -2.22
SCFD1-216ENST00000555550 OR10W1Q8NGF6 305 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 PRRC1Q96M27 445 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 ZYG11BQ9C0D3 744 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 COX16Q9P0S2 106 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 STX18Q9P2W9 335 aaKnown RBP1.17□□□□□ -2.22
SCFD1-216ENST00000555550 RABL2BQ9UNT1 228 aa1.17□□□□□ -2.22
SCFD1-216ENST00000555550 TRBV11-1A0A0K0K1C0 115 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 OR2AG2A6NM03 316 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 ANKRD65E5RJM6 399 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 H0Y8G0 127 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 RNF13O43567 381 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 UQCRFS1P1P0C7P4 283 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 ZNF708P17019 499 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 GTF2E2P29084 291 aaKnown RBP1.16□□□□□ -2.22
SCFD1-216ENST00000555550 PRSS3P35030 304 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 MRPL19P49406 292 aaKnown RBP1.16□□□□□ -2.22
SCFD1-216ENST00000555550 RGS6P49758 472 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 SULT1E1P49888 294 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 FOXA1P55317 472 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 ATP5G2Q06055 141 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 MAPRE2Q15555 327 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 TMEM220Q6QAJ8 160 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 METAP1DQ6UB28 335 aaPredicted RBP1.16□□□□□ -2.22
SCFD1-216ENST00000555550 SPESP1Q6UW49 350 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 SLC22A9Q8IVM8 553 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 RPEQ96AT9 228 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 ZNF75AQ96N20 296 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 ALS2CR12Q96Q35 445 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 XPO6Q96QU8 1125 aaKnown RBP1.16□□□□□ -2.22
SCFD1-216ENST00000555550 CALN1Q9BXU9 219 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 ACP6Q9NPH0 428 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 FBXO8Q9NRD0 319 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 CA10Q9NS85 328 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 CLN6Q9NWW5 311 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 ZNF337Q9Y3M9 751 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 INSRP06213 1382 aa1.16□□□□□ -2.22
SCFD1-216ENST00000555550 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP1.16□□□□□ -2.22
SCFD1-216ENST00000555550 PRRC2BQ5JSZ5 2229 aaKnown RBP1.15□□□□□ -2.23
SCFD1-216ENST00000555550 A0A0G2JMP0 313 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 A0A0X1KG70 313 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 H3BQ85 93 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 CACNG3O60359 315 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 CCNB2O95067 398 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 FARS2O95363 451 aaKnown RBP1.15□□□□□ -2.23
SCFD1-216ENST00000555550 FTH1P02794 183 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 IL3RAP26951 378 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 OR1G1P47890 313 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 LGALS7P47929 136 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 HADHQ16836 314 aaKnown RBP1.15□□□□□ -2.23
SCFD1-216ENST00000555550 KLHL40Q2TBA0 621 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 CCDC183Q5T5S1 534 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 MRPL2Q5T653 305 aaKnown RBP1.15□□□□□ -2.23
SCFD1-216ENST00000555550 TMEM236Q5W0B7 351 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 TRMT10CQ7L0Y3 403 aaKnown RBP1.15□□□□□ -2.23
SCFD1-216ENST00000555550 AKR7LQ8NHP1 331 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 SFXN5Q8TD22 340 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 SNF8Q96H20 258 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 C20orf166-AS1Q96NR2 134 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 PEBP4Q96S96 227 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 C20orf24Q9BUV8 137 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 ACOT9Q9Y305 439 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 UBN2Q6ZU65 1347 aa1.15□□□□□ -2.23
SCFD1-216ENST00000555550 TSPAN11A1L157 253 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 MYBPHLA2RUH7 354 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 CCDC169A6NNP5 214 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 PSPHP1O15172 72 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 PSCAO43653 123 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 CDH16O75309 829 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 ENTPD6O75354 484 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 WBP4O75554 376 aaKnown RBP1.14□□□□□ -2.23
SCFD1-216ENST00000555550 CDS2O95674 445 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 GZMAP12544 262 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 RAB5AP20339 215 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 RFC3P40938 356 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 ERFP50548 548 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 PCOTHQ58A44 107 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 LRRC66Q68CR7 880 aa1.14□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms