RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 MRPS28Q9Y2Q9 187 aaKnown RBP4.78□□□□□ -1.64
LIMA1-212ENST00000552491 PIAS3Q9Y6X2 628 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 SPAG17Q6Q759 2223 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 SHANK1Q9Y566 2161 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 NPIPB13A6NJU9 1138 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 NPIPB4C9JG80 1138 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 H3BML4 177 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 MSTNO14793 375 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 TAAR5O14804 337 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 PET100P0DJ07 73 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 FOLR2P14207 255 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 KLK2P20151 261 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 FPR2P25090 351 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 PTGER4P35408 488 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 FASLGP48023 281 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 DHPSP49366 369 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-212ENST00000552491 DAP3P51398 398 aaKnown RBP4.78□□□□□ -1.64
LIMA1-212ENST00000552491 FBXW4P57775 412 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 S100A10P60903 97 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 TLE3Q04726 772 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 HYAL1Q12794 435 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 RSPO4Q2I0M5 234 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-212ENST00000552491 C1orf189Q5VU69 101 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 TMEM268Q5VZI3 342 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 KIAA0895LQ68EN5 471 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 KLHL24Q6TFL4 600 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 H1FNTQ75WM6 255 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-212ENST00000552491 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.78□□□□□ -1.64
LIMA1-212ENST00000552491 TMPRSS9Q7Z410 1059 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 ABHD12BQ7Z5M8 362 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-212ENST00000552491 ABCA7Q8IZY2 2146 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 OR8B12Q8NGG6 310 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 OR5D18Q8NGL1 313 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 OR1N1Q8NGS0 311 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 OR6S1Q8NH40 331 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 THAP3Q8WTV1 239 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-212ENST00000552491 RLN3Q8WXF3 142 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 C2orf50Q96LR7 162 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 OCSTAMPQ9BR26 566 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 ST6GALNAC5Q9BVH7 336 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 VN1R1Q9GZP7 353 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 METTL8Q9H825 291 aaKnown RBP4.78□□□□□ -1.64
LIMA1-212ENST00000552491 SEC61A2Q9H9S3 476 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 RNF122Q9H9V4 155 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 TAF9BQ9HBM6 251 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 FANCFQ9NPI8 374 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 GPR84Q9NQS5 396 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 KLHL13Q9P2N7 655 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 CACFD1Q9UGQ2 172 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 SUSD2Q9UGT4 822 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 EML6Q6ZMW3 1958 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 KRTAP9-6A0A140TA67 174 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 TLCD2A6NGC4 264 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF814B7Z6K7 855 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 RER1O15258 196 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 CRTAPO75718 401 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-212ENST00000552491 KNG1P01042 644 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 SFTPBP07988 381 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF44P15621 663 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 AMY2BP19961 511 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 PAX6P26367 422 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 SULT1A2P50226 295 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 BLKP51451 505 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF121P58317 390 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-212ENST00000552491 RAB5BP61020 215 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 MRPS21P82921 87 aaKnown RBP4.77□□□□□ -1.65
LIMA1-212ENST00000552491 ACY1Q03154 408 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 CFHR1Q03591 330 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 FOXF1Q12946 379 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 SWI5Q1ZZU3 235 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 CDCP2Q5VXM1 449 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 Q6ZS52 159 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 GKN2Q86XP6 184 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 OR5H2Q8NGV7 314 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 OR1L3Q8NH93 324 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 KCNG3Q8TAE7 436 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 SSC4DQ8WTU2 575 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 SECTM1Q8WVN6 248 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 HIST1H2BAQ96A08 127 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 ISOC2Q96AB3 205 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 C14orf79Q96F83 325 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 AKR1E2Q96JD6 320 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 FAM71F1Q96KD3 344 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-212ENST00000552491 SCRT1Q9BWW7 348 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 TMEM59Q9BXS4 323 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 MRPL13Q9BYD1 178 aaKnown RBP4.77□□□□□ -1.65
LIMA1-212ENST00000552491 SMIM3Q9BZL3 60 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 EGLN1Q9GZT9 426 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 C8orf33Q9H7E9 229 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-212ENST00000552491 CHST11Q9NPF2 352 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 SMCO4Q9NRQ5 59 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 SERINC1Q9NRX5 453 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 CLEC1BQ9P126 229 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 POMT1Q9Y6A1 747 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 C5orf52A6NGY3 159 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 LIPT2A6NK58 231 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 FOXI3A8MTJ6 420 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-212ENST00000552491 RAMP1O60894 148 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 DAOP14920 347 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 FOSL2P15408 326 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms