RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 MAPK1IP1LQ8NDC0 245 aa13.71□□□□□ -0.21
CHMP1A-209ENST00000550872 CCDC54Q8NEL0 328 aa13.71□□□□□ -0.21
CHMP1A-209ENST00000550872 ZNF420Q8TAQ5 688 aaPredicted RBP13.71□□□□□ -0.21
CHMP1A-209ENST00000550872 TIMD4Q96H15 378 aa13.71□□□□□ -0.21
CHMP1A-209ENST00000550872 C18orf12Q96KH6 178 aa13.71□□□□□ -0.21
CHMP1A-209ENST00000550872 PLEKHA1Q9HB21 404 aa13.71□□□□□ -0.21
CHMP1A-209ENST00000550872 ABCB9Q9NP78 766 aa13.71□□□□□ -0.21
CHMP1A-209ENST00000550872 UFSP2Q9NUQ7 469 aa13.71□□□□□ -0.21
CHMP1A-209ENST00000550872 DCAF16Q9NXF7 216 aa13.71□□□□□ -0.21
CHMP1A-209ENST00000550872 ERVK-18Q9QC07 812 aa13.71□□□□□ -0.21
CHMP1A-209ENST00000550872 ERGIC3Q9Y282 383 aa13.71□□□□□ -0.21
CHMP1A-209ENST00000550872 TRBV2A0A0J9YWF9 115 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 LOC100289279A0A1B0GTE1 492 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 A6NIN4 97 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 IFNL4K9M1U5 179 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 ISG15P05161 165 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 ZNF12P17014 697 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 USF1P22415 310 aaPredicted RBP13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 CRHBPP24387 322 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 RBMXP38159 391 aaKnown RBP13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 GATA4P43694 442 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 CDH15P55291 814 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 SLC35A2P78381 396 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 HNRNPA0Q13151 305 aaKnown RBP13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 MPPED2Q15777 294 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 CCDC58Q4VC31 144 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 RBM48Q5RL73 367 aaKnown RBP13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 CLVS2Q5SYC1 327 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 AVPI1Q5T686 147 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 RPL22L1Q6P5R6 122 aaKnown RBP13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 KRT74Q7RTS7 529 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 PEG10Q86TG7 708 aaKnown RBP13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 OR11L1Q8NGX0 322 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 OR5AK2Q8NH90 309 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 OR5P3Q8WZ94 311 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 SGCDQ92629 289 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 RAB1CQ92928 201 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 ERGIC1Q969X5 290 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 ITPKCQ96DU7 683 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 RNF170Q96K19 258 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 COX4I2Q96KJ9 171 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 RTL8AQ9BWD3 113 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 COMMD4Q9H0A8 199 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 DUSP21Q9H596 190 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 FN3KRPQ9HA64 309 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 PAK1IP1Q9NWT1 392 aaPredicted RBP13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 HHLA2Q9UM44 414 aa13.7□□□□□ -0.22
CHMP1A-209ENST00000550872 CSPG4Q6UVK1 2322 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 A0A096LNT2 108 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 A6NLC8 198 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 LRRC30A6NM36 301 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 TMEM212A6NML5 194 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 DHRS7CA6NNS2 312 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 LMX1BO60663 402 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 PTBP3O95758 552 aaKnown RBP13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 NRASP01111 189 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 INHBBP09529 407 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 FOSL1P15407 271 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 PMELP40967 661 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 WNT4P56705 351 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 LOXL1Q08397 574 aaPredicted RBP13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 DMRTC1Q5HYR2 192 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 CEP78Q5JTW2 689 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 RNLSQ5VYX0 342 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 PLCXD3Q63HM9 321 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 XAF1Q6GPH4 301 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 KCTD8Q6ZWB6 473 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 NANOGP1Q8N7R0 232 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 OR10AC1Q8NH08 325 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 PDCD1LG2Q9BQ51 273 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 CDCA4Q9BXL8 241 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 CCDC90BQ9GZT6 254 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 TRIM36Q9NQ86 728 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 UBAP1Q9NZ09 502 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 BLOC1S6Q9UL45 172 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 WIPI2Q9Y4P8 454 aa13.69□□□□□ -0.22
CHMP1A-209ENST00000550872 ZNF469Q96JG9 3925 aaPredicted RBP13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 IGHV4-61A0A0C4DH41 118 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 TMEM178BH3BS89 294 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 OGG1O15527 345 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 RGS10O43665 173 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 ZFPL1O95159 310 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 CYB5R3P00387 301 aaPredicted RBP13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 LALBAP00709 142 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 RPSAP08865 295 aaKnown RBP13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 IRF2P14316 349 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 EEF1B2P24534 225 aaKnown RBP13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 CDK5R1Q15078 307 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 CEACAM21Q3KPI0 293 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 WDR86Q86TI4 376 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 ZNF485Q8NCK3 441 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 OR1M1Q8NGA1 313 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 OR5A2Q8NGI9 324 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 HPSE2Q8WWQ2 592 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 HPS1Q92902 700 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 NARFLQ9H6Q4 476 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 GPR173Q9NS66 373 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 C1orf123Q9NWV4 160 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 NPTNQ9Y639 398 aa13.68□□□□□ -0.22
CHMP1A-209ENST00000550872 SIRT4Q9Y6E7 314 aaPredicted RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms