RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 GGA2Q9UJY4 613 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 SIGLEC7Q9Y286 467 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 SIGLEC9Q9Y336 463 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 KLF12Q9Y4X4 402 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 LRRC42Q9Y546 428 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 BZW2Q9Y6E2 419 aaKnown RBP2.39□□□□□ -2.03
VPS29-205ENST00000548539 PTPRTO14522 1441 aa2.39□□□□□ -2.03
VPS29-205ENST00000548539 IGHV3-49A0A0A0MS15 119 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 A0A0J9YYE9 177 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 CENPVL3A0A0U1RRI6 287 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 ZNF850A8MQ14 1090 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 GMDSO60547 372 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 PLIN3O60664 434 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 TTC4O95801 387 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 TRBC1P01850 177 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 CD74P04233 296 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 IL4P05112 153 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 PRKACBP22694 351 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 PRLHRP49683 370 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 HCCSP53701 268 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 ATP5J2P56134 94 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 CMC4P56277 68 aaPredicted RBP2.38□□□□□ -2.03
VPS29-205ENST00000548539 TAS2R39P59534 338 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 INCA1Q0VD86 236 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 ZNF816Q0VGE8 651 aaPredicted RBP2.38□□□□□ -2.03
VPS29-205ENST00000548539 CPTPQ5TA50 214 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 KHDRBS2Q5VWX1 349 aaKnown RBP2.38□□□□□ -2.03
VPS29-205ENST00000548539 STEAP4Q687X5 459 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 DUPD1Q68J44 220 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 GUSBP11Q6P575 273 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 IGFL3Q6UXB1 125 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 ZNF615Q8N8J6 731 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 OR13C9Q8NGT0 318 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 OR9A2Q8NGT5 310 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 OR6K6Q8NGW6 343 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 OR51A7Q8NH64 312 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 NDNFQ8TB73 568 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 CACNG8Q8WXS5 425 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 CENPNQ96H22 339 aaPredicted RBP2.38□□□□□ -2.03
VPS29-205ENST00000548539 LINC00477Q96M19 166 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 MARVELD1Q9BSK0 173 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 EMC6Q9BV81 110 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 TM6SF2Q9BZW4 377 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 OR51B5Q9H339 312 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 TREX1Q9NSU2 369 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 YEATS2Q9ULM3 1422 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 PLA2R1Q13018 1463 aa2.38□□□□□ -2.03
VPS29-205ENST00000548539 SBNO1A3KN83 1393 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 K7EM74 188 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 UPK1BO75841 260 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 TRAPPC6AO75865 159 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 GATBO75879 557 aaKnown RBP2.37□□□□□ -2.03
VPS29-205ENST00000548539 IGLV2-8P01709 118 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 RPN2P04844 631 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 CXCR1P25024 350 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 GALR1P47211 349 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 PSMC5P62195 406 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 KDSRQ06136 332 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 IFFO1Q0D2I5 559 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 ST3GAL4Q11206 333 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 THOC7Q6I9Y2 204 aaKnown RBP2.37□□□□□ -2.03
VPS29-205ENST00000548539 EPGNQ6UW88 154 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 H1FOOQ8IZA3 346 aaPredicted RBP2.37□□□□□ -2.03
VPS29-205ENST00000548539 FAM58AQ8N1B3 248 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 OSR2Q8N2R0 312 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 PDCL2Q8N4E4 241 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 CYB561A3Q8NBI2 242 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 OR1L1Q8NH94 360 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 ENKURQ8TC29 256 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 SULT4A1Q9BR01 284 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 SFXN3Q9BWM7 321 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 RSPO3Q9BXY4 272 aaPredicted RBP2.37□□□□□ -2.03
VPS29-205ENST00000548539 BEX2Q9BXY8 128 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 ANKHQ9HCJ1 492 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 HEBP1Q9NRV9 189 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 VAX2Q9UIW0 290 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 PPIL1Q9Y3C6 166 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 V9GYY9 64 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 MROH5Q6ZUA9 1318 aa2.37□□□□□ -2.03
VPS29-205ENST00000548539 TRAV40A0A0B4J280 105 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 CCL15-CCL14A0A0B4J2E2 113 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 IGKV6-21A0A0C4DH24 114 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 TVP23AA6NH52 213 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 RFXANKO14593 260 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 MYL12BO14950 172 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 POLR1CO15160 346 aaPredicted RBP2.36□□□□□ -2.03
VPS29-205ENST00000548539 PSPHP1O15172 72 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 RRP8O43159 456 aaKnown RBP2.36□□□□□ -2.03
VPS29-205ENST00000548539 CYB5R3P00387 301 aaPredicted RBP2.36□□□□□ -2.03
VPS29-205ENST00000548539 SLC35G6P0C7Q6 338 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 HTR2CP28335 458 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 GNRHRP30968 328 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 PCK1P35558 622 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 MTPNP58546 118 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 RPL31P62899 125 aaKnown RBP2.36□□□□□ -2.03
VPS29-205ENST00000548539 SHHQ15465 462 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 LY6EQ16553 131 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 CCL15Q16663 113 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 MFSD14CQ5VZR4 134 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 C16orf87Q6PH81 154 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms