RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 SELLP14151 372 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 HSD11B1P28845 292 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 GABRA2P47869 451 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 BMXP51813 675 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 SLC35A2P78381 396 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 FAM3AP98173 230 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 CD69Q07108 199 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 FAM185AQ8N0U4 392 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 FAM86B1Q8N7N1 296 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 WFDC9Q8NEX5 89 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 OR52H1Q8NGJ2 320 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 OR52J3Q8NH60 311 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 SLAMF6Q96DU3 332 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 SEH1LQ96EE3 360 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 REEP6Q96HR9 211 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 GAFA1Q96PS6 74 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 FN3KQ9H479 309 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 CMTM6Q9NX76 183 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 NDUFAF4Q9P032 175 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 MPC1Q9Y5U8 109 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 E9PQ18 207 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 GMNNO75496 209 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 SPARCP09486 303 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 IGLL1P15814 213 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 AMY2BP19961 511 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.73□□□□□ -0.21
VPS29-204ENST00000548259 DCTN2Q13561 401 aaKnown RBP13.73□□□□□ -0.21
VPS29-204ENST00000548259 SEC23BQ15437 767 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 DGUOKQ16854 277 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 SLC35F1Q5T1Q4 408 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 C11orf87Q6NUJ2 197 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 KCTD8Q6ZWB6 473 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 Q8N2B8 174 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 OR52L1Q8NGH7 329 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 ANGPTL6Q8NI99 470 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 C17orf50Q8WW18 174 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 ZNF702PQ9H963 129 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 SERTAD4Q9NUC0 356 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 NLKQ9UBE8 527 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 CD300AQ9UGN4 299 aa13.73□□□□□ -0.21
VPS29-204ENST00000548259 TVP23AA6NH52 213 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 OR2AT4A6NND4 320 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 K7EIL1 84 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 CHST1O43916 411 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 CLIC3O95833 236 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 PF4P02776 101 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 FMO3P31513 532 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 PYCR1P32322 319 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 RPS27P42677 84 aaKnown RBP13.72□□□□□ -0.21
VPS29-204ENST00000548259 CX3CR1P49238 355 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 ENTPD1P49961 510 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 CAPZA1P52907 286 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 CNN3Q15417 329 aaKnown RBP13.72□□□□□ -0.21
VPS29-204ENST00000548259 SLC15A3Q8IY34 581 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 TMEM185AQ8NFB2 350 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 RPS4Y2Q8TD47 263 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 FOXRED1Q96CU9 486 aaPredicted RBP13.72□□□□□ -0.21
VPS29-204ENST00000548259 RCC1LQ96I51 464 aaKnown RBP13.72□□□□□ -0.21
VPS29-204ENST00000548259 HIST1H2AAQ96QV6 131 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 DDOQ99489 341 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 HOPXQ9BPY8 73 aaPredicted RBP13.72□□□□□ -0.21
VPS29-204ENST00000548259 GPR61Q9BZJ8 451 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 WDR13Q9H1Z4 485 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 OR10A2Q9H208 303 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 RGCCQ9H4X1 137 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 SAR1AQ9NR31 198 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 SAMD4AQ9UPU9 718 aaKnown RBP13.72□□□□□ -0.21
VPS29-204ENST00000548259 LRP12Q9Y561 859 aa13.72□□□□□ -0.21
VPS29-204ENST00000548259 VGLL3A8MV65 326 aa13.71□□□□□ -0.21
VPS29-204ENST00000548259 AKR7A2O43488 359 aa13.71□□□□□ -0.21
VPS29-204ENST00000548259 GLRA1P23415 457 aa13.71□□□□□ -0.21
VPS29-204ENST00000548259 GSK3AP49840 483 aa13.71□□□□□ -0.21
VPS29-204ENST00000548259 GFOD2Q3B7J2 385 aa13.71□□□□□ -0.21
VPS29-204ENST00000548259 HCP5Q6MZN7 132 aa13.71□□□□□ -0.21
VPS29-204ENST00000548259 RPL13AP3Q6NVV1 102 aa13.71□□□□□ -0.21
VPS29-204ENST00000548259 OR5K1Q8NHB7 308 aa13.71□□□□□ -0.21
VPS29-204ENST00000548259 DPF1Q92782 380 aa13.71□□□□□ -0.21
VPS29-204ENST00000548259 SGK3Q96BR1 496 aa13.71□□□□□ -0.21
VPS29-204ENST00000548259 RCN3Q96D15 328 aa13.71□□□□□ -0.21
VPS29-204ENST00000548259 KCTD14Q9BQ13 255 aaPredicted RBP13.71□□□□□ -0.21
VPS29-204ENST00000548259 RHBDD3Q9Y3P4 386 aa13.71□□□□□ -0.21
VPS29-204ENST00000548259 COMMD3-BMI1R4GMX3 469 aa13.71□□□□□ -0.21
VPS29-204ENST00000548259 hCG_38984A0A1B0GV85 526 aa13.7□□□□□ -0.22
VPS29-204ENST00000548259 SLC22A2O15244 555 aa13.7□□□□□ -0.22
VPS29-204ENST00000548259 GADD45GO95257 159 aa13.7□□□□□ -0.22
VPS29-204ENST00000548259 VDAC2P45880 294 aaPredicted RBP13.7□□□□□ -0.22
VPS29-204ENST00000548259 BLVRAP53004 296 aa13.7□□□□□ -0.22
VPS29-204ENST00000548259 MXRA7P84157 204 aa13.7□□□□□ -0.22
VPS29-204ENST00000548259 HABP2Q14520 560 aaPredicted RBP13.7□□□□□ -0.22
VPS29-204ENST00000548259 TIGD4Q8IY51 512 aa13.7□□□□□ -0.22
VPS29-204ENST00000548259 MKXQ8IYA7 352 aa13.7□□□□□ -0.22
VPS29-204ENST00000548259 RPL3LQ92901 407 aaKnown RBP13.7□□□□□ -0.22
VPS29-204ENST00000548259 DHRS1Q96LJ7 313 aa13.7□□□□□ -0.22
VPS29-204ENST00000548259 OR5M11Q96RB7 305 aa13.7□□□□□ -0.22
VPS29-204ENST00000548259 TCF19Q9Y242 345 aa13.7□□□□□ -0.22
VPS29-204ENST00000548259 MEGF11A6BM72 1044 aa13.69□□□□□ -0.22
VPS29-204ENST00000548259 ADARB2-AS1A8MUL3 147 aa13.69□□□□□ -0.22
VPS29-204ENST00000548259 HMGB1P1B2RPK0 211 aaPredicted RBP13.69□□□□□ -0.22
VPS29-204ENST00000548259 F2RL2O00254 374 aa13.69□□□□□ -0.22
VPS29-204ENST00000548259 ZNF593O00488 134 aaPredicted RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms