RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 ASCL1P50553 236 aa13.23□□□□□ -0.29
USP28-214ENST00000545540 RAET1LQ5VY80 246 aa13.23□□□□□ -0.29
USP28-214ENST00000545540 RHBDD2Q6NTF9 364 aa13.23□□□□□ -0.29
USP28-214ENST00000545540 TMEM17Q86X19 198 aa13.23□□□□□ -0.29
USP28-214ENST00000545540 TNRC18O15417 2968 aaPredicted RBP13.22□□□□□ -0.29
USP28-214ENST00000545540 FREM1Q5H8C1 2179 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 BOD1L1Q8NFC6 3051 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 FAM230AA0A1W2PPH8 454 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 TTLL8A6PVC2 850 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 TPPPO94811 219 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 ATG12O94817 140 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 SLC25A4P12235 298 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 NPBWR1P48145 328 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 ZP4Q12836 540 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 TAF9Q16594 264 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 CCDC157Q569K6 752 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 TMEM128Q5BJH2 165 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 CPEB2Q7Z5Q1 589 aaKnown RBP13.22□□□□□ -0.29
USP28-214ENST00000545540 BAP18Q8IXM2 172 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 OR4A4PQ8NGN8 299 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 REEP6Q96HR9 211 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 COL4A2P08572 1712 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 TMEM218A2RU14 115 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 LRP3O75074 770 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 IGHV3-9P01782 118 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 P2RY4P51582 365 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 FXYD4P59646 89 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 H3F3CQ6NXT2 135 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 GPHA2Q96T91 129 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 OR10A2Q9H208 303 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 PNRC2Q9NPJ4 139 aaKnown RBP13.22□□□□□ -0.29
USP28-214ENST00000545540 MCTS1Q9ULC4 181 aaKnown RBP13.22□□□□□ -0.29
USP28-214ENST00000545540 GPR132Q9UNW8 380 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 PIGLQ9Y2B2 252 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 DHRS7CA6NNS2 312 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 C3orf80F5H4A9 247 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 HPNP05981 417 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 AFF3P51826 1226 aaKnown RBP13.22□□□□□ -0.29
USP28-214ENST00000545540 SNAI3Q3KNW1 292 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 AADACL3Q5VUY0 350 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 DEGS2Q6QHC5 323 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 ZDHHC22Q8N966 263 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 KCNG3Q8TAE7 436 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 CYTL1Q9NRR1 136 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 LSM5Q9Y4Y9 91 aaKnown RBP13.22□□□□□ -0.29
USP28-214ENST00000545540 FLVCR1Q9Y5Y0 555 aa13.22□□□□□ -0.29
USP28-214ENST00000545540 BET1O15155 118 aa13.21□□□□□ -0.29
USP28-214ENST00000545540 GLULP15104 373 aa13.21□□□□□ -0.29
USP28-214ENST00000545540 DCDP81605 110 aaKnown RBP13.21□□□□□ -0.29
USP28-214ENST00000545540 HAGHLQ6PII5 290 aaPredicted RBP13.21□□□□□ -0.29
USP28-214ENST00000545540 FAAP24Q9BTP7 215 aa13.21□□□□□ -0.29
USP28-214ENST00000545540 SLC2A8Q9NY64 477 aa13.21□□□□□ -0.29
USP28-214ENST00000545540 PLEK2Q9NYT0 353 aa13.21□□□□□ -0.29
USP28-214ENST00000545540 DNAJC13O75165 2243 aa13.21□□□□□ -0.29
USP28-214ENST00000545540 TMEM225BP0DP42 221 aa13.21□□□□□ -0.3
USP28-214ENST00000545540 CLRN3Q8NCR9 226 aa13.21□□□□□ -0.3
USP28-214ENST00000545540 UQCC2Q9BRT2 126 aa13.21□□□□□ -0.3
USP28-214ENST00000545540 PTGFRP43088 359 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 CHRFAM7AQ494W8 412 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 OR2M3Q8NG83 312 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 EDAQ92838 391 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 S100A13Q99584 98 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 SPSB2Q99619 263 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 CDC6Q99741 560 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 RAB33BQ9H082 229 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 WNT16Q9UBV4 365 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 DIDO1Q9BTC0 2240 aaKnown RBP13.2□□□□□ -0.3
USP28-214ENST00000545540 A0A0A6YYH2 397 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 A6NJ64 397 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 CD37P11049 281 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 SCRN3Q0VDG4 424 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 ZNF345Q14585 488 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 SHBQ15464 509 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 TGIF1Q15583 401 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 BSCL2Q96G97 398 aaPredicted RBP13.2□□□□□ -0.3
USP28-214ENST00000545540 AIFM2Q9BRQ8 373 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 MBTPS2O43462 519 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 ZFAND5O76080 213 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 CCL3P10147 92 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 GUCA1AP43080 201 aaPredicted RBP13.2□□□□□ -0.3
USP28-214ENST00000545540 LPCAT3Q6P1A2 487 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 ZNF2Q9BSG1 426 aaPredicted RBP13.2□□□□□ -0.3
USP28-214ENST00000545540 RARRES3Q9UL19 164 aa13.2□□□□□ -0.3
USP28-214ENST00000545540 CCDC163A0A0D9SF12 145 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 XRCC2O43543 280 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 DIRAS3O95661 229 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 TPT1P13693 172 aaKnown RBP13.19□□□□□ -0.3
USP28-214ENST00000545540 GPR85P60893 370 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 RSPO1Q2MKA7 263 aaPredicted RBP13.19□□□□□ -0.3
USP28-214ENST00000545540 CRIP3Q6Q6R5 217 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 EIF4E3Q8N5X7 224 aaKnown RBP13.19□□□□□ -0.3
USP28-214ENST00000545540 PTX4Q96A99 478 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 LIME1Q9H400 295 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 PLEKHJ1Q9NW61 149 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 RFNGQ9Y644 331 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 DBX1A6NMT0 343 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 C9JQL5 133 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 SIGLEC6O43699 453 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 SFT2D2O95562 160 aa13.19□□□□□ -0.3
USP28-214ENST00000545540 IAH1Q2TAA2 248 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms