RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	PJVK	Q0ZLH3	352 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	TAF13	Q15543	124 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	LPCAT3	Q6P1A2	487 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	C16orf54	Q6UWD8	224 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	SSX9	Q7RTT3	188 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	PPP1R32	Q7Z5V6	425 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	OR5M8	Q8NGP6	311 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	STOML3	Q8TAV4	291 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	RNF141	Q8WVD5	230 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	NKD1	Q969G9	470 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	NRIP2	Q9BQI9	281 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	ZNF160	Q9HCG1	818 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	CENPM	Q9NSP4	180 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	ASH2L	Q9UBL3	628 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	TNFSF15	O95150	251 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	MT-ND4L	P03901	98 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	MELTF	P08582	738 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	AKAIN1	P0CW23	69 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	PMEL	P40967	661 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	FOXF1	Q12946	379 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	COTL1	Q14019	142 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	RAB11B	Q15907	218 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	EXT1	Q16394	746 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	GFOD2	Q3B7J2	385 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	ZNF627	Q7L945	461 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	CATSPERD	Q86XM0	798 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	CMBL	Q96DG6	245 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	FBXO17	Q96EF6	278 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	SLC25A44	Q96H78	314 aa	Predicted RBP	13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	POM121	Q96HA1	1249 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	RASL10B	Q96S79	203 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	OPA3	Q9H6K4	179 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	TMEM231	Q9H6L2	316 aa		13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	FARSA	Q9Y285	508 aa	Known RBP	13.25	□□□□□ -0.29
CHFR-223	ENST00000544268	NSG1	A0A0A6YYJ2	146 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	ZNF705E	A8MWA4	302 aa	Predicted RBP	13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	P2RY10	O00398	339 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	MT-ATP6	P00846	226 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	CSN2	P05814	226 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	OR4E1	P0C645	316 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	OR8U8	P0C7N1	319 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	LIPC	P11150	499 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	HTR5A	P47898	357 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	OR52N5	Q8NH56	324 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	SOX7	Q9BT81	388 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	GGACT	Q9BVM4	153 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	POFUT1	Q9H488	388 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	LOC107986453	A0A1B0GWG9	222 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	SULT2B1	O00204	365 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	SLC17A2	O00624	439 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	DKK1	O94907	266 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	ITGB2	P05107	769 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	ZNF14	P17017	642 aa	Predicted RBP	13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	LAP3	P28838	519 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	RAB2A	P61019	212 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	MAJIN	Q3KP22	176 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	SLC22A6	Q4U2R8	563 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	FAM166A	Q6J272	317 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	GALNT16	Q8N428	558 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	JAGN1	Q8N5M9	183 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	SLC26A10	Q8NG04	563 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	OR10G3	Q8NGC4	313 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	OR5AP2	Q8NGF4	316 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	M1AP	Q8TC57	530 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	CA5BP1	Q8WTZ4	195 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	SEC61A2	Q9H9S3	476 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	G6PC2	Q9NQR9	355 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	UPB1	Q9UBR1	384 aa		13.24	□□□□□ -0.29
CHFR-223	ENST00000544268	WIPF3	A6NGB9	483 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	SRSF10	O75494	262 aa	Known RBP	13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	FARS2	O95363	451 aa	Known RBP	13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	IGHE	P01854	428 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	GLO1	Q04760	184 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	RBM39	Q14498	530 aa	Known RBP	13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	OR4S1	Q8NGB4	309 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	OR4D6	Q8NGJ1	314 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	OR13C3	Q8NGS6	347 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	ST7L	Q8TDW4	575 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	FAM46B	Q96A09	425 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	CLCC1	Q96S66	551 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	NAA11	Q9BSU3	229 aa	Predicted RBP	13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	ASPM	Q8IZT6	3477 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	GVINP1	Q7Z2Y8	2422 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	LOC100509620	A0A075B734	347 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	LOC100289279	A0A1B0GTE1	492 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	CD74	P04233	296 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	RD3L	P0DJH9	198 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	TMEM11	P17152	192 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	ROM1	Q03395	351 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	MFAP5	Q13361	173 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	NUP54	Q7Z3B4	507 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	INO80E	Q8NBZ0	244 aa	Predicted RBP	13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	ACBD4	Q8NC06	268 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	ASB10	Q8WXI3	467 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	SPACA5	Q96QH8	159 aa		13.23	□□□□□ -0.29
CHFR-223	ENST00000544268	CDV3	Q9UKY7	258 aa	Known RBP	13.23	□□□□□ -0.29
CHFR-223	ENST00000544268		A0A1W2PNR3	127 aa		13.22	□□□□□ -0.29
CHFR-223	ENST00000544268	ZNF814	B7Z6K7	855 aa		13.22	□□□□□ -0.29
CHFR-223	ENST00000544268		F8VVB4	439 aa		13.22	□□□□□ -0.29
CHFR-223	ENST00000544268		F8VWA3	439 aa		13.22	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms