RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 THUMPD1Q9NXG2 353 aaKnown RBP3.79□□□□□ -1.8
LIMS1-214ENST00000542845 ASIC5Q9NY37 505 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 VSX1Q9NZR4 365 aaPredicted RBP3.79□□□□□ -1.8
LIMS1-214ENST00000542845 STX18Q9P2W9 335 aaKnown RBP3.79□□□□□ -1.8
LIMS1-214ENST00000542845 SLC25A10Q9UBX3 287 aaPredicted RBP3.79□□□□□ -1.8
LIMS1-214ENST00000542845 SLC23A1Q9UHI7 598 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 RPS6KA6Q9UK32 745 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 POLR1DQ9Y2S0 133 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 NDUFAF1Q9Y375 327 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 N6AMT1Q9Y5N5 214 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 A0A087WWL8 130 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 UBE2QL1A1L167 161 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 OR6C6A6NF89 314 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 NKX6-3A6NJ46 265 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 B5MCH6 92 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 CCL24O00175 119 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 RHBDL1O75783 438 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 OR7A10O76100 309 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 ACTL6BO94805 426 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 PLA2G1BP04054 148 aaKnown RBP3.78□□□□□ -1.8
LIMS1-214ENST00000542845 ETS2P15036 469 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 MUC1P15941 1255 aaPredicted RBP3.78□□□□□ -1.8
LIMS1-214ENST00000542845 LBPP18428 481 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 GRK5P34947 590 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 GGT2P36268 569 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 TGM4P49221 684 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 OR12D2P58182 307 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 RPL27P61353 136 aaKnown RBP3.78□□□□□ -1.8
LIMS1-214ENST00000542845 RPL23AP62750 156 aaKnown RBP3.78□□□□□ -1.8
LIMS1-214ENST00000542845 CBX1P83916 185 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 AQP6Q13520 282 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 SELPLGQ14242 412 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 RGNQ15493 299 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 SRSF7Q16629 238 aaKnown RBP eCLIP3.78□□□□□ -1.8
LIMS1-214ENST00000542845 DGUOKQ16854 277 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 DEFB136Q30KP8 78 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 GAGE13Q4V321 117 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 ALG10Q5BKT4 473 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 LIN54Q6MZP7 749 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 ZNF613Q6PF04 617 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 DHRS4L2Q6PKH6 230 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 CORO6Q6QEF8 472 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 DPY19L4Q7Z388 723 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 OR2W3Q7Z3T1 314 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 CPLX4Q7Z7G2 160 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 ARMC8Q8IUR7 673 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 MICU2Q8IYU8 434 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 TMEM185AQ8NFB2 350 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 OR4M1Q8NGD0 313 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 OR8S1Q8NH09 359 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 ADAMTS16Q8TE57 1224 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 STMN2Q93045 179 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 SGTBQ96EQ0 304 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 RNFT2Q96EX2 444 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 MED30Q96HR3 178 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 P2RX4Q99571 388 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 SEPHS2Q99611 448 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 PPP1R3EQ9H7J1 279 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 BCL2L10Q9HD36 194 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 MEPEQ9NQ76 525 aaPredicted RBP3.78□□□□□ -1.8
LIMS1-214ENST00000542845 HAO2Q9NYQ3 351 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.78□□□□□ -1.8
LIMS1-214ENST00000542845 LINC00527Q9UJ94 153 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 KCNG2Q9UJ96 466 aa3.78□□□□□ -1.8
LIMS1-214ENST00000542845 MEX3AA1L020 520 aaKnown RBP3.77□□□□□ -1.81
LIMS1-214ENST00000542845 TRAPPC13A5PLN9 417 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 PRORSD1PA6NEY8 169 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 CD300LBA8K4G0 201 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 PRR23D1E9PI22 279 aaPredicted RBP3.77□□□□□ -1.81
LIMS1-214ENST00000542845 H3BSH0 61 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 CLIC1O00299 241 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 BHLHE40O14503 412 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 CDIPTO14735 213 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 LDLRAD4O15165 306 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 RIPK2O43353 540 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 ITM2AO43736 263 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 SPAG7O75391 227 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 SERPINB7O75635 380 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 MT-ND1P03886 318 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 IFNA6P05013 189 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 HCKP08631 526 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 ALDOCP09972 364 aaKnown RBP3.77□□□□□ -1.81
LIMS1-214ENST00000542845 PRR23D2P0DMB1 279 aaPredicted RBP3.77□□□□□ -1.81
LIMS1-214ENST00000542845 CTLA4P16410 223 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 NAA10P41227 235 aaPredicted RBP3.77□□□□□ -1.81
LIMS1-214ENST00000542845 VEGFCP49767 419 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 CSNK2BP67870 215 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 CDK6Q00534 326 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 MZT1Q08AG7 82 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 MEP1BQ16820 701 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 FAM27D1Q5T7N8 215 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 ATPAF1Q5TC12 328 aaPredicted RBP3.77□□□□□ -1.81
LIMS1-214ENST00000542845 REEP3Q6NUK4 255 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 C16orf89Q6UX73 402 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 LCNL1Q6ZST4 164 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 FOXL2NBQ6ZUU3 175 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 NKAIN4Q8IVV8 208 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 ZNF695Q8IW36 515 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 CCDC28AQ8IWP9 274 aa3.77□□□□□ -1.81
LIMS1-214ENST00000542845 RPP25LQ8N5L8 163 aaKnown RBP3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms