RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 RAB3IPQ96QF0 476 aaPredicted RBP12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 ABHD6Q9BV23 337 aa12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 TSSK6Q9BXA6 273 aa12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 ARGLU1Q9NWB6 273 aaPredicted RBP12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 MAGEL2Q9UJ55 1249 aa12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 FAM183AA6NL82 134 aa12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 CHST1O43916 411 aa12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 RHBDL1O75783 438 aa12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 ATP6V1B2P21281 511 aa12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 DCTDP32321 178 aa12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 IFNGR2P38484 337 aa12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 DDOSTP39656 456 aa12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 SLC25A1P53007 311 aa12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 PRDX4Q13162 271 aa12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 KPRPQ5T749 579 aaPredicted RBP12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 RASSF6Q6ZTQ3 369 aa12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 IQCF1Q8N6M8 205 aa12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 AQP11Q8NBQ7 271 aa12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 OR6N2Q8NGY6 317 aa12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 RNF133Q8WVZ7 376 aa12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 C12orf43Q96C57 262 aaKnown RBP12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 NSMCE2Q96MF7 247 aa12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 FBLN5Q9UBX5 448 aa12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 KLHDC2Q9Y2U9 406 aa12.6□□□□□ -0.39
CLSTN3-213ENST00000541953 COL7A1Q02388 2944 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 NOTCH3Q9UM47 2321 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 BTBD17A6NE02 478 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 ANKRD61A6NGH8 418 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 ZNF850A8MQ14 1090 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 TNFRSF11BO00300 401 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 EEF1B2P24534 225 aaKnown RBP12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 HSD11B1P28845 292 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 GABRA5P31644 462 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 GRK5P34947 590 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 OPRL1P41146 370 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 HMGA2P52926 109 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 ERVFRD-1P60508 538 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 GRB2P62993 217 aaKnown RBP12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 GUCA2AQ02747 115 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 MZT1Q08AG7 82 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 HERPUD1Q15011 391 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 LRRC10Q5BKY1 277 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 ERI1Q8IV48 349 aaKnown RBP12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 CMTM4Q8IZR5 234 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 GALNT4Q8N4A0 578 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 BEND2Q8NDZ0 799 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 NPRL2Q8WTW4 380 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 OR5P3Q8WZ94 311 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 MCUR1Q96AQ8 359 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 CMTM5Q96DZ9 223 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 ELAC2Q9BQ52 826 aaKnown RBP12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 SLC25A10Q9UBX3 287 aaPredicted RBP12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 MAB21L2Q9Y586 359 aa12.59□□□□□ -0.39
CLSTN3-213ENST00000541953 IGKV1D-17A0A075B6S4 117 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 SIGLEC5O15389 551 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 GMNNO75496 209 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 PAHP00439 452 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 OPN1MWP04001 364 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 OPN1MW2P0DN77 364 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 OPN1MW3P0DN78 364 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 NDUFB7P17568 137 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 UBE2E1P51965 193 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 FBLN7Q53RD9 439 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 CYP2R1Q6VVX0 501 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 KLHDC1Q8N7A1 406 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 ZNRF1Q8ND25 227 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 OR5R1Q8NH85 324 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 CFHR4Q92496 578 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 DUS3LQ96G46 650 aaKnown RBP12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 CDRT15Q96T59 188 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 SSX3Q99909 188 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 SP140LQ9H930 580 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 ZNF222Q9UK12 451 aa12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 CAB39Q9Y376 341 aaPredicted RBP12.58□□□□□ -0.4
CLSTN3-213ENST00000541953 GPR37O15354 613 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 SELENOFO60613 162 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 TIPRLO75663 272 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 ACAA1P09110 424 aaPredicted RBP12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 PRDX6P30041 224 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 GNALP38405 381 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 NAA10P41227 235 aaPredicted RBP12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 MAGEA2P43356 314 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 HABP2Q14520 560 aaPredicted RBP12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 RPL13AP3Q6NVV1 102 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 TIGD4Q8IY51 512 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 PGAM4Q8N0Y7 254 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 OR10Z1Q8NGY1 313 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 PIFOQ8TCI5 191 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 PGAM5Q96HS1 289 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 INTS14Q96SY0 518 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 NIPSNAP1Q9BPW8 284 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 MICU1Q9BPX6 476 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 RTL8AQ9BWD3 113 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 C19orf12Q9NSK7 152 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 ARL8BQ9NVJ2 186 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 U3KQV3 271 aa12.57□□□□□ -0.4
CLSTN3-213ENST00000541953 A0A1W2PQ09 198 aa12.56□□□□□ -0.4
CLSTN3-213ENST00000541953 TCRBV5S2A0A599 114 aa12.56□□□□□ -0.4
CLSTN3-213ENST00000541953 NKX6-3A6NJ46 265 aa12.56□□□□□ -0.4
CLSTN3-213ENST00000541953 OR2AT4A6NND4 320 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms