RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 KCNK7Q9Y2U2 307 aa12.63□□□□□ -0.39
CLIP1-216ENST00000541410 A0A1W2PR80 420 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 VSIG10L2P0DP72 767 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 MTCP1P56278 107 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 BCL2A1Q16548 175 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 ZNF584Q8IVC4 421 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 PNLDC1Q8NA58 520 aaKnown RBP12.62□□□□□ -0.39
CLIP1-216ENST00000541410 LINC00470Q9BZP3 86 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 ACTR6Q9GZN1 396 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 IGKV1-27A0A075B6S5 117 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 ZNF724A8MTY0 619 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 ZNF736B4DX44 427 aaPredicted RBP12.62□□□□□ -0.39
CLIP1-216ENST00000541410 TPPPO94811 219 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 PRF1P14222 555 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 TMEM50BP56557 158 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 TAS2R19P59542 299 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 ZP1P60852 638 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 CAMK2BQ13554 666 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 RNPS1Q15287 305 aaKnown RBP12.62□□□□□ -0.39
CLIP1-216ENST00000541410 RBMS2Q15434 407 aaKnown RBP12.62□□□□□ -0.39
CLIP1-216ENST00000541410 RAB12Q6IQ22 244 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 UXS1Q8NBZ7 420 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 OR51T1Q8NGJ9 327 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 KCNG3Q8TAE7 436 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 PP6455Q8WZ26 134 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 ARHGAP5-AS1Q96IT6 56 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 CHIAQ9BZP6 476 aa12.62□□□□□ -0.39
CLIP1-216ENST00000541410 SSX5O60225 188 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 RAD51DO75771 328 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 TMEM225BP0DP42 221 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 AGTR1P30556 359 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 GSK3AP49840 483 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 RAB1AP62820 205 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 FAM3AP98173 230 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 RIPPLY1Q0D2K3 151 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 HLXQ14774 488 aaPredicted RBP12.61□□□□□ -0.39
CLIP1-216ENST00000541410 KRTAP27-1Q3LI81 207 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 IDO2Q6ZQW0 420 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 C17orf107Q6ZR85 190 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 PIGCQ92535 297 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 RAB3CQ96E17 227 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 WDR89Q96FK6 387 aaPredicted RBP12.61□□□□□ -0.39
CLIP1-216ENST00000541410 COL25A1Q9BXS0 654 aaPredicted RBP12.61□□□□□ -0.39
CLIP1-216ENST00000541410 MOV10Q9HCE1 1003 aaKnown RBP12.61□□□□□ -0.39
CLIP1-216ENST00000541410 ZNF581Q9P0T4 197 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 KCNMB2Q9Y691 235 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 INTS1Q8N201 2190 aaKnown RBP12.61□□□□□ -0.39
CLIP1-216ENST00000541410 AKR7A2O43488 359 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 TOXO94900 526 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 MGMTP16455 207 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 RAG2P55895 527 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 CD276Q5ZPR3 534 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 TMED4Q7Z7H5 227 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 TRIB1Q96RU8 372 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 S100A13Q99584 98 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 SLC6A7Q99884 636 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 TMEM246Q9BRR3 403 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 LUZP4Q9P127 313 aa12.61□□□□□ -0.39
CLIP1-216ENST00000541410 APC2O95996 2303 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 ACACAQ13085 2346 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 A0A0A6YYH2 397 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 A6NJ64 397 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 SULT1C2O00338 296 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 NGFP01138 241 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 CPN1P15169 458 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 CAPZA1P52907 286 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 GLDNQ6ZMI3 551 aaPredicted RBP12.6□□□□□ -0.39
CLIP1-216ENST00000541410 P4HA3Q7Z4N8 544 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 BPIFB2Q8N4F0 458 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 TMEM229BQ8NBD8 167 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 GRPEL2Q8TAA5 225 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 MAFIPQ8WZ33 124 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 RADILQ96JH8 1075 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 SCPEP1Q9HB40 452 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 IFT46Q9NQC8 304 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 CA10Q9NS85 328 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 CRIM1Q9NZV1 1036 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 ESPL1Q14674 2120 aa12.6□□□□□ -0.39
CLIP1-216ENST00000541410 hCG_38984A0A1B0GV85 526 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 RPL36A-HNRNPH2H7BZ11 118 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 IL18BPO95998 194 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 NRASP01111 189 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 C1QBP02746 253 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 GABRR1P24046 479 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 HRH1P35367 487 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 GZMKP49863 264 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 TSC22D1Q15714 1073 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 RP1L1Q8IWN7 2480 aaPredicted RBP12.59□□□□□ -0.39
CLIP1-216ENST00000541410 PIAS4Q8N2W9 510 aaPredicted RBP12.59□□□□□ -0.39
CLIP1-216ENST00000541410 ZNF629Q9UEG4 869 aaPredicted RBP12.59□□□□□ -0.39
CLIP1-216ENST00000541410 A0A1B0GUH1 482 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 KLK10O43240 276 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 PMP2P02689 132 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 SULT1A3P0DMM9 295 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 SULT1A4P0DMN0 295 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 GNG2P59768 71 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 METTL11BQ5VVY1 283 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 MOB3CQ70IA8 216 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 OR2W3Q7Z3T1 314 aa12.59□□□□□ -0.39
CLIP1-216ENST00000541410 ZNF230Q9UIE0 474 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms