RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 ZBTB37Q5TC79 503 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 SULF2Q8IWU5 870 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 LINC00518Q8N0U6 118 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 UXS1Q8NBZ7 420 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 CHST4Q8NCG5 386 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 CCDC107Q8WV48 283 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 NUDCD2Q8WVJ2 157 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 ASB13Q8WXK3 278 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 FOXB1Q99853 325 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 SELENOIQ9C0D9 397 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 ABI3Q9P2A4 366 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 PLSCR5A0PG75 271 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 DISC1C4P0D8 188 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 HIST1H1DP16402 221 aaKnown RBP12.04□□□□□ -0.48
RTN3-210ENST00000540798 PTGFRP43088 359 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 OR1C1Q15619 314 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 ESCO2Q56NI9 601 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 GVQW1Q8N7I0 195 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 ABHD3Q8WU67 409 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 ALKBH3Q96Q83 286 aaPredicted RBP12.04□□□□□ -0.48
RTN3-210ENST00000540798 TMEM59Q9BXS4 323 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 HES7Q9BYE0 225 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 IL17BQ9UHF5 180 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 MFNGO00587 321 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 TNFSF15O95150 251 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 OR4E1P0C645 316 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 FAHP16930 419 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 ZNF708P17019 499 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 H2BFSP57053 126 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 RPS27AP62979 156 aaKnown RBP12.03□□□□□ -0.48
RTN3-210ENST00000540798 PNLIPRP3Q17RR3 467 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 ZNF774Q6NX45 483 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 TEX261Q6UWH6 196 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 LURAP1LQ8IV03 231 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 HAS2Q92819 552 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 PRRT1Q99946 306 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 TTTY12Q9BZ98 90 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 LINC00470Q9BZP3 86 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 B4GALT7Q9UBV7 327 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 PIGLQ9Y2B2 252 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 U3KQ87 197 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 STMND1H3BQB6 276 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 SOCS1O15524 211 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 SNAPC5O75971 98 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 MPIG6BO95866 241 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 CELA3AP09093 270 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 ZNF32P17041 273 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 CEACAM16Q2WEN9 425 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 SLC22A6Q4U2R8 563 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 TMEM65Q6PI78 240 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 OR56B1Q8NGI3 324 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 OR10Z1Q8NGY1 313 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 LHFPL5Q8TAF8 219 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 WDR89Q96FK6 387 aaPredicted RBP12.03□□□□□ -0.48
RTN3-210ENST00000540798 TM2D1Q9BX74 207 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 WNT5BQ9H1J7 359 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 OPN4Q9UHM6 478 aa12.03□□□□□ -0.48
RTN3-210ENST00000540798 A0A1W2PP11 408 aa12.02□□□□□ -0.48
RTN3-210ENST00000540798 RGS11O94810 467 aa12.02□□□□□ -0.48
RTN3-210ENST00000540798 B4GALT1P15291 398 aa12.02□□□□□ -0.48
RTN3-210ENST00000540798 PSG4Q00888 419 aa12.02□□□□□ -0.48
RTN3-210ENST00000540798 RNASE10Q5GAN6 216 aaKnown RBP12.02□□□□□ -0.48
RTN3-210ENST00000540798 CHMP1BQ7LBR1 199 aa12.02□□□□□ -0.48
RTN3-210ENST00000540798 C1QL2Q7Z5L3 287 aa12.02□□□□□ -0.48
RTN3-210ENST00000540798 MDS2Q8NDY4 140 aa12.02□□□□□ -0.48
RTN3-210ENST00000540798 CHIAQ9BZP6 476 aa12.02□□□□□ -0.48
RTN3-210ENST00000540798 OR2H1Q9GZK4 316 aa12.02□□□□□ -0.48
RTN3-210ENST00000540798 EIF3KQ9UBQ5 218 aaKnown RBP12.02□□□□□ -0.48
RTN3-210ENST00000540798 NUP50Q9UKX7 468 aa12.02□□□□□ -0.48
RTN3-210ENST00000540798 TIMM10BQ9Y5J6 103 aa12.02□□□□□ -0.48
RTN3-210ENST00000540798 PDGFAP04085 211 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 MMP7P09237 267 aaPredicted RBP12.02□□□□□ -0.49
RTN3-210ENST00000540798 ITGA3P26006 1051 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 SFRP5Q5T4F7 317 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 PIP4P1Q86T03 277 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 ZDHHC22Q8N966 263 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 PNLDC1Q8NA58 520 aaKnown RBP12.02□□□□□ -0.49
RTN3-210ENST00000540798 RAB3CQ96E17 227 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 OCSTAMPQ9BR26 566 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 BANF2Q9H503 90 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 VSIG4Q9Y279 399 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 RAD51DO75771 328 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 ACKR3P25106 362 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 FAM209BQ5JX69 171 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 OR52W1Q6IF63 320 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 FTMTQ8N4E7 242 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 FGFBP3Q8TAT2 258 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 GPER1Q99527 375 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 URM1Q9BTM9 101 aaKnown RBP12.02□□□□□ -0.49
RTN3-210ENST00000540798 CST11Q9H112 138 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 ZNF391Q9UJN7 358 aa12.02□□□□□ -0.49
RTN3-210ENST00000540798 RPL36A-HNRNPH2H7BZ11 118 aa12.01□□□□□ -0.49
RTN3-210ENST00000540798 TOR1AO14656 332 aa12.01□□□□□ -0.49
RTN3-210ENST00000540798 NME2P1O60361 137 aa12.01□□□□□ -0.49
RTN3-210ENST00000540798 MPC2O95563 127 aa12.01□□□□□ -0.49
RTN3-210ENST00000540798 NME2P22392 152 aa12.01□□□□□ -0.49
RTN3-210ENST00000540798 PCBD1P61457 104 aa12.01□□□□□ -0.49
RTN3-210ENST00000540798 SLC25A42Q86VD7 318 aa12.01□□□□□ -0.49
RTN3-210ENST00000540798 SKA3Q8IX90 412 aa12.01□□□□□ -0.49
RTN3-210ENST00000540798 SUMF1Q8NBK3 374 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms