RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 CLDN6P56747 220 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 ZNF117Q03924 483 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 P2RY6Q15077 328 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 PRAMEF14Q5SWL7 426 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 FDX2Q6P4F2 183 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 PSRC1Q6PGN9 363 aaPredicted RBP11.04□□□□□ -0.64
USP3-203ENST00000538686 SPSB3Q6PJ21 355 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 DPY19L2P2Q6ZN68 376 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 TMEM182Q6ZP80 229 aaPredicted RBP11.04□□□□□ -0.64
USP3-203ENST00000538686 CATSPERDQ86XM0 798 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 NPEPL1Q8NDH3 523 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 ADAMTS15Q8TE58 950 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 RHBDD1Q8TEB9 315 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 ERGIC1Q969X5 290 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 FAM71F1Q96KD3 344 aaPredicted RBP11.04□□□□□ -0.64
USP3-203ENST00000538686 LIPGQ9Y5X9 500 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 TMEM14AQ9Y6G1 99 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 MDC1Q14676 2089 aaKnown RBP11.04□□□□□ -0.64
USP3-203ENST00000538686 FITM1A5D6W6 292 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 AQP7O14520 342 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 ARPC3O15145 178 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 TMPRSS11DO60235 418 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 WDR1O75083 606 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 C1QL1O75973 258 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 CCKBRP32239 447 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 SPINT3P49223 89 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 SUPT4H1P63272 117 aaKnown RBP11.04□□□□□ -0.64
USP3-203ENST00000538686 TAF10Q12962 218 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 ZNF266Q14584 549 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 ACTL10Q5JWF8 245 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 GLYATL3Q5SZD4 288 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 DPPA3Q6W0C5 159 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 ZNF740Q8NDX6 193 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 AIF1LQ9BQI0 150 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 PAAF1Q9BRP4 392 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 PELI2Q9HAT8 420 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 RNF150Q9ULK6 438 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 IER3IP1Q9Y5U9 82 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 TRAV30A0A087WSZ9 112 aa11.03□□□□□ -0.64
USP3-203ENST00000538686 PRR32B1ATL7 298 aa11.03□□□□□ -0.64
USP3-203ENST00000538686 NDUFB8O95169 186 aa11.03□□□□□ -0.64
USP3-203ENST00000538686 DBIP07108 87 aaKnown RBP11.03□□□□□ -0.64
USP3-203ENST00000538686 CD46P15529 392 aa11.03□□□□□ -0.64
USP3-203ENST00000538686 ENDOGQ14249 297 aaKnown RBP11.03□□□□□ -0.64
USP3-203ENST00000538686 TRIM61Q5EBN2 209 aa11.03□□□□□ -0.64
USP3-203ENST00000538686 CST9Q5W186 159 aa11.03□□□□□ -0.64
USP3-203ENST00000538686 LHFPL4Q7Z7J7 247 aa11.03□□□□□ -0.64
USP3-203ENST00000538686 DCAF4L2Q8NA75 395 aa11.03□□□□□ -0.64
USP3-203ENST00000538686 OR2M7Q8NG81 312 aa11.03□□□□□ -0.64
USP3-203ENST00000538686 OR2V1Q8NHB1 315 aa11.03□□□□□ -0.64
USP3-203ENST00000538686 PTPMT1Q8WUK0 201 aaPredicted RBP11.03□□□□□ -0.64
USP3-203ENST00000538686 PLD4Q96BZ4 506 aa11.03□□□□□ -0.64
USP3-203ENST00000538686 BTF3L4Q96K17 158 aa11.03□□□□□ -0.64
USP3-203ENST00000538686 C4orf45Q96LM5 186 aa11.03□□□□□ -0.64
USP3-203ENST00000538686 ALG12Q9BV10 488 aa11.03□□□□□ -0.64
USP3-203ENST00000538686 TBL1XR1Q9BZK7 514 aa11.03□□□□□ -0.64
USP3-203ENST00000538686 ZMAT3Q9HA38 289 aaKnown RBP11.03□□□□□ -0.64
USP3-203ENST00000538686 WSB2Q9NYS7 404 aaPredicted RBP11.03□□□□□ -0.64
USP3-203ENST00000538686 FLRT3Q9NZU0 649 aa11.03□□□□□ -0.64
USP3-203ENST00000538686 COX11Q9Y6N1 276 aa11.03□□□□□ -0.64
USP3-203ENST00000538686 A0A1B0GVT2 93 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 RNF212BA8MTL3 300 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 PRRT4C9JH25 899 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 SCDO00767 359 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 NDUFS4O43181 175 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 PQBP1O60828 265 aaKnown RBP11.02□□□□□ -0.64
USP3-203ENST00000538686 MMP23AO75900 390 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 FBXO45P0C2W1 286 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 NBEAP1P0C6P0 100 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 EPHA8P29322 1005 aaPredicted RBP11.02□□□□□ -0.64
USP3-203ENST00000538686 RBMXP38159 391 aaKnown RBP11.02□□□□□ -0.64
USP3-203ENST00000538686 CSNK1A1P48729 337 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 CNN1P51911 297 aaKnown RBP11.02□□□□□ -0.64
USP3-203ENST00000538686 TMEM95Q3KNT9 176 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 TMEM225Q6GV28 225 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 TOMM20LQ6UXN7 152 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 OR4B1Q8NGF8 309 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 ADAMTS18Q8TE60 1221 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 PGAM5Q96HS1 289 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 OR5B12Q96R08 314 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 CMKLR1Q99788 373 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 SF3B5Q9BWJ5 86 aaKnown RBP11.02□□□□□ -0.64
USP3-203ENST00000538686 Q9N2K0 584 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 SLC2A9Q9NRM0 540 aa11.02□□□□□ -0.64
USP3-203ENST00000538686 A0A0A6YYD5 115 aa11.02□□□□□ -0.65
USP3-203ENST00000538686 MAP1LC3B2A6NCE7 125 aa11.02□□□□□ -0.65
USP3-203ENST00000538686 ZIC2O95409 532 aaPredicted RBP11.02□□□□□ -0.65
USP3-203ENST00000538686 PFN1P07737 140 aaKnown RBP11.02□□□□□ -0.65
USP3-203ENST00000538686 CSNK2A2P19784 350 aaPredicted RBP11.02□□□□□ -0.65
USP3-203ENST00000538686 ECI1P42126 302 aa11.02□□□□□ -0.65
USP3-203ENST00000538686 RPL23AP62750 156 aaKnown RBP11.02□□□□□ -0.65
USP3-203ENST00000538686 MFGE8Q08431 387 aaPredicted RBP11.02□□□□□ -0.65
USP3-203ENST00000538686 ARHGAP11BQ3KRB8 267 aa11.02□□□□□ -0.65
USP3-203ENST00000538686 TRMT12Q53H54 448 aaKnown RBP11.02□□□□□ -0.65
USP3-203ENST00000538686 FBLN7Q53RD9 439 aa11.02□□□□□ -0.65
USP3-203ENST00000538686 C1orf100Q5SVJ3 147 aa11.02□□□□□ -0.65
USP3-203ENST00000538686 LINC01590Q5TEZ4 76 aa11.02□□□□□ -0.65
USP3-203ENST00000538686 LRRC69Q6ZNQ3 347 aa11.02□□□□□ -0.65
USP3-203ENST00000538686 MYPOPQ86VE0 399 aaPredicted RBP11.02□□□□□ -0.65
USP3-203ENST00000538686 CISD2Q8N5K1 135 aaKnown RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms