RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 H2AFY2Q9P0M6 372 aaPredicted RBP11.06□□□□□ -0.64
VPS28-211ENST00000530790 A0A0U1RQV5 110 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 ZNF816-ZNF321PA0A0X1KG74 233 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 TMEM89A2RUT3 159 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 ACOD1A6NK06 481 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 ZNF879B4DU55 563 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 DVL1O14640 695 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 TNFRSF13BO14836 293 aaPredicted RBP11.05□□□□□ -0.64
VPS28-211ENST00000530790 LIPFP07098 398 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 EPHA2P29317 976 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 DCTDP32321 178 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 MAP2K3P46734 347 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 COMPP49747 757 aaPredicted RBP11.05□□□□□ -0.64
VPS28-211ENST00000530790 GPR157Q5UAW9 335 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 MEPCEQ7L2J0 689 aaKnown RBP11.05□□□□□ -0.64
VPS28-211ENST00000530790 BCDIN3DQ7Z5W3 292 aaKnown RBP11.05□□□□□ -0.64
VPS28-211ENST00000530790 GID4Q8IVV7 300 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 HPSE2Q8WWQ2 592 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 LRTOMTQ8WZ04 291 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 OR5P3Q8WZ94 311 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 ST8SIA4Q92187 359 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 PIGCQ92535 297 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 C12orf43Q96C57 262 aaKnown RBP11.05□□□□□ -0.64
VPS28-211ENST00000530790 ZNF48Q96MX3 618 aaPredicted RBP11.05□□□□□ -0.64
VPS28-211ENST00000530790 DUX5Q96PT3 197 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 HIST1H2AAQ96QV6 131 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 IL4I1Q96RQ9 567 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 MNTQ99583 582 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 CIB1Q99828 191 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 PCGF1Q9BSM1 259 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 PBOV1Q9GZY1 135 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 MOB1AQ9H8S9 216 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 KAAG1Q9UBP8 84 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 COPS3Q9UNS2 423 aa11.05□□□□□ -0.64
VPS28-211ENST00000530790 NKX6-3A6NJ46 265 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 PRR32B1ATL7 298 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 SRRM5B3KS81 715 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.04□□□□□ -0.64
VPS28-211ENST00000530790 TOX4O94842 621 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 ECDO95905 644 aaPredicted RBP11.04□□□□□ -0.64
VPS28-211ENST00000530790 ATP6V1B1P15313 513 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 PRTN3P24158 256 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 CFPP27918 469 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 CFHR2P36980 270 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 CXCR4P61073 352 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 MFGE8Q08431 387 aaPredicted RBP11.04□□□□□ -0.64
VPS28-211ENST00000530790 POU4F2Q12837 409 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 C11orf91Q3C1V1 193 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 WDR38Q5JTN6 314 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 AADACL4Q5VUY2 407 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 METTL11BQ5VVY1 283 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 ZNF322Q6U7Q0 402 aaPredicted RBP11.04□□□□□ -0.64
VPS28-211ENST00000530790 SLC36A1Q7Z2H8 476 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 THAP5Q7Z6K1 395 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 SLC35F2Q8IXU6 374 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 OR10Z1Q8NGY1 313 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 OR51E1Q8TCB6 317 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 RPL3LQ92901 407 aaKnown RBP11.04□□□□□ -0.64
VPS28-211ENST00000530790 ITFG2Q969R8 447 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 SLC25A28Q96A46 364 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 RNF170Q96K19 258 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 FAM71F1Q96KD3 344 aaPredicted RBP11.04□□□□□ -0.64
VPS28-211ENST00000530790 RASSF4Q9H2L5 321 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 ADGRL4Q9HBW9 690 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 GPR84Q9NQS5 396 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 DNAJB11Q9UBS4 358 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 NUFIP1Q9UHK0 495 aaKnown RBP11.04□□□□□ -0.64
VPS28-211ENST00000530790 OAZ3Q9UMX2 235 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 GTF2A1LQ9UNN4 478 aa11.04□□□□□ -0.64
VPS28-211ENST00000530790 ZNF670-ZNF695F2Z2N8 137 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 LOC110117498-PIK3R3F6TDL0 507 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 P2RY10O00398 339 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 GPM6AP51674 278 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 BPIFB3P59826 476 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 GMFBP60983 142 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 ACTR3P61158 418 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 CEP78Q5JTW2 689 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 BCL2L15Q5TBC7 163 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 BRD3OSQ6XYD6 125 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 BTN2A1Q7KYR7 527 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 FAM216BQ8N7L0 139 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 C3orf56Q8N813 242 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 SCCPDHQ8NBX0 429 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 CENPNQ96H22 339 aaPredicted RBP11.03□□□□□ -0.64
VPS28-211ENST00000530790 CCL13Q99616 98 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 GABARAPL3Q9BY60 117 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 FGF23Q9GZV9 251 aaPredicted RBP11.03□□□□□ -0.64
VPS28-211ENST00000530790 SEMA6AQ9H2E6 1030 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 RIBC2Q9H4K1 309 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 CLN6Q9NWW5 311 aa11.03□□□□□ -0.64
VPS28-211ENST00000530790 MDFIC2A0A1B0GVS7 189 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 A0A1B0GW55 424 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 SAC3D1A6NKF1 404 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 OR5B21A6NL26 309 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 CLDN34H7C241 214 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 AKR7A2O43488 359 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 NDUFB3O43676 98 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 MTRF1O75570 445 aaKnown RBP11.02□□□□□ -0.65
VPS28-211ENST00000530790 DHRS3O75911 302 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 IGLV3-1P01715 115 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms