RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 MICBQ29980 383 aa17.18■□□□□ 0.34
VPS28-206ENST00000526734 SFRP4Q6FHJ7 346 aaPredicted RBP17.18■□□□□ 0.34
VPS28-206ENST00000526734 WDR82Q6UXN9 313 aa17.18■□□□□ 0.34
VPS28-206ENST00000526734 BCDIN3DQ7Z5W3 292 aaKnown RBP17.18■□□□□ 0.34
VPS28-206ENST00000526734 COMMD2Q86X83 199 aa17.18■□□□□ 0.34
VPS28-206ENST00000526734 C11orf53Q8IXP5 236 aa17.18■□□□□ 0.34
VPS28-206ENST00000526734 LRRC29Q8WV35 223 aa17.18■□□□□ 0.34
VPS28-206ENST00000526734 TRUB1Q8WWH5 349 aaKnown RBP17.18■□□□□ 0.34
VPS28-206ENST00000526734 OR5P3Q8WZ94 311 aa17.18■□□□□ 0.34
VPS28-206ENST00000526734 UPRTQ96BW1 309 aa17.18■□□□□ 0.34
VPS28-206ENST00000526734 PKP2Q99959 881 aa17.18■□□□□ 0.34
VPS28-206ENST00000526734 NUDT16L1Q9BRJ7 211 aaKnown RBP17.18■□□□□ 0.34
VPS28-206ENST00000526734 USE1Q9NZ43 259 aa17.18■□□□□ 0.34
VPS28-206ENST00000526734 SVEP1Q4LDE5 3571 aa17.18■□□□□ 0.34
VPS28-206ENST00000526734 ZNF850A8MQ14 1090 aa17.17■□□□□ 0.34
VPS28-206ENST00000526734 SRRM5B3KS81 715 aa17.17■□□□□ 0.34
VPS28-206ENST00000526734 LOC110117498-PIK3R3F6TDL0 507 aa17.17■□□□□ 0.34
VPS28-206ENST00000526734 PSMD9O00233 223 aa17.17■□□□□ 0.34
VPS28-206ENST00000526734 TNFRSF13BO14836 293 aaPredicted RBP17.17■□□□□ 0.34
VPS28-206ENST00000526734 IGLV3-1P01715 115 aa17.17■□□□□ 0.34
VPS28-206ENST00000526734 SRSF2Q01130 221 aaKnown RBP17.17■□□□□ 0.34
VPS28-206ENST00000526734 FAM76BQ5HYJ3 339 aa17.17■□□□□ 0.34
VPS28-206ENST00000526734 THAP5Q7Z6K1 395 aa17.17■□□□□ 0.34
VPS28-206ENST00000526734 FAM90A1Q86YD7 464 aa17.17■□□□□ 0.34
VPS28-206ENST00000526734 C19orf18Q8NEA5 215 aa17.17■□□□□ 0.34
VPS28-206ENST00000526734 PIGCQ92535 297 aa17.17■□□□□ 0.34
VPS28-206ENST00000526734 TECTBQ96PL2 329 aa17.17■□□□□ 0.34
VPS28-206ENST00000526734 SLC6A7Q99884 636 aa17.17■□□□□ 0.34
VPS28-206ENST00000526734 R4GMQ9 66 aa17.17■□□□□ 0.34
VPS28-206ENST00000526734 PRR32B1ATL7 298 aa17.16■□□□□ 0.34
VPS28-206ENST00000526734 H3BNX3 289 aa17.16■□□□□ 0.34
VPS28-206ENST00000526734 ECDO95905 644 aaPredicted RBP17.16■□□□□ 0.34
VPS28-206ENST00000526734 ALPLP05186 524 aa17.16■□□□□ 0.34
VPS28-206ENST00000526734 OR2T7P0C7T2 308 aa17.16■□□□□ 0.34
VPS28-206ENST00000526734 CSNK2BP67870 215 aa17.16■□□□□ 0.34
VPS28-206ENST00000526734 RIPPLY1Q0D2K3 151 aa17.16■□□□□ 0.34
VPS28-206ENST00000526734 RBMS3Q6XE24 437 aaKnown RBP17.16■□□□□ 0.34
VPS28-206ENST00000526734 OR51G2Q8NGK0 314 aa17.16■□□□□ 0.34
VPS28-206ENST00000526734 OR2T27Q8NH04 317 aa17.16■□□□□ 0.34
VPS28-206ENST00000526734 RNF170Q96K19 258 aa17.16■□□□□ 0.34
VPS28-206ENST00000526734 RAB3IPQ96QF0 476 aaPredicted RBP17.16■□□□□ 0.34
VPS28-206ENST00000526734 DNTTIP1Q9H147 329 aa17.16■□□□□ 0.34
VPS28-206ENST00000526734 GPR84Q9NQS5 396 aa17.16■□□□□ 0.34
VPS28-206ENST00000526734 IMPAD1Q9NX62 359 aa17.16■□□□□ 0.34
VPS28-206ENST00000526734 CTSZQ9UBR2 303 aa17.16■□□□□ 0.34
VPS28-206ENST00000526734 OR5B21A6NL26 309 aa17.15■□□□□ 0.34
VPS28-206ENST00000526734 CDIPTO14735 213 aa17.15■□□□□ 0.34
VPS28-206ENST00000526734 SRSF10O75494 262 aaKnown RBP17.15■□□□□ 0.34
VPS28-206ENST00000526734 DHRS3O75911 302 aa17.15■□□□□ 0.34
VPS28-206ENST00000526734 KRT8P05787 483 aa17.15■□□□□ 0.34
VPS28-206ENST00000526734 POLR2IP36954 125 aaKnown RBP17.15■□□□□ 0.34
VPS28-206ENST00000526734 ALDH3A2P51648 485 aa17.15■□□□□ 0.34
VPS28-206ENST00000526734 GNG3P63215 75 aa17.15■□□□□ 0.34
VPS28-206ENST00000526734 TUSC1Q2TAM9 212 aa17.15■□□□□ 0.34
VPS28-206ENST00000526734 CEACAM21Q3KPI0 293 aa17.15■□□□□ 0.34
VPS28-206ENST00000526734 KLF17Q5JT82 389 aaPredicted RBP17.15■□□□□ 0.34
VPS28-206ENST00000526734 BCL2L15Q5TBC7 163 aa17.15■□□□□ 0.34
VPS28-206ENST00000526734 C9orf139Q6ZV77 190 aa17.15■□□□□ 0.34
VPS28-206ENST00000526734 KCTD8Q6ZWB6 473 aa17.15■□□□□ 0.34
VPS28-206ENST00000526734 SLC36A1Q7Z2H8 476 aa17.15■□□□□ 0.34
VPS28-206ENST00000526734 PNLDC1Q8NA58 520 aaKnown RBP17.15■□□□□ 0.34
VPS28-206ENST00000526734 OR51E1Q8TCB6 317 aa17.15■□□□□ 0.34
VPS28-206ENST00000526734 HPSE2Q8WWQ2 592 aa17.15■□□□□ 0.34
VPS28-206ENST00000526734 ZMAT3Q9HA38 289 aaKnown RBP17.15■□□□□ 0.34
VPS28-206ENST00000526734 ENPP5Q9UJA9 477 aa17.15■□□□□ 0.34
VPS28-206ENST00000526734 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP17.15■□□□□ 0.343e-6■□□□□ 9.1
VPS28-206ENST00000526734 SNX5Q9Y5X3 404 aa17.15■□□□□ 0.34
VPS28-206ENST00000526734 DHRS7CA6NNS2 312 aa17.14■□□□□ 0.33
VPS28-206ENST00000526734 EI24O14681 340 aa17.14■□□□□ 0.33
VPS28-206ENST00000526734 GPR37O15354 613 aa17.14■□□□□ 0.33
VPS28-206ENST00000526734 GYPAP02724 150 aa17.14■□□□□ 0.33
VPS28-206ENST00000526734 TTRP02766 147 aa17.14■□□□□ 0.33
VPS28-206ENST00000526734 EGR1P18146 543 aa17.14■□□□□ 0.33
VPS28-206ENST00000526734 ATP6V1E1P36543 226 aa17.14■□□□□ 0.33
VPS28-206ENST00000526734 BPIFB3P59826 476 aa17.14■□□□□ 0.33
VPS28-206ENST00000526734 MFGE8Q08431 387 aaPredicted RBP17.14■□□□□ 0.33
VPS28-206ENST00000526734 DOK3Q7L591 496 aa17.14■□□□□ 0.33
VPS28-206ENST00000526734 ELMOD2Q8IZ81 293 aa17.14■□□□□ 0.33
VPS28-206ENST00000526734 OR5A2Q8NGI9 324 aa17.14■□□□□ 0.33
VPS28-206ENST00000526734 FAM216AQ8WUB2 273 aa17.14■□□□□ 0.33
VPS28-206ENST00000526734 FAM71F1Q96KD3 344 aaPredicted RBP17.14■□□□□ 0.33
VPS28-206ENST00000526734 HRASLS5Q96KN8 279 aa17.14■□□□□ 0.33
VPS28-206ENST00000526734 DMRTB1Q96MA1 342 aa17.14■□□□□ 0.33
VPS28-206ENST00000526734 APOL4Q9BPW4 351 aa17.14■□□□□ 0.33
VPS28-206ENST00000526734 TTTY10Q9BZA0 68 aa17.14■□□□□ 0.33
VPS28-206ENST00000526734 MRM2Q9UI43 246 aaKnown RBP17.14■□□□□ 0.33
VPS28-206ENST00000526734 GTF2A1LQ9UNN4 478 aa17.14■□□□□ 0.33
VPS28-206ENST00000526734 ARHGAP32A7KAX9 2087 aa17.13■□□□□ 0.33
VPS28-206ENST00000526734 C22orf46C9J442 243 aa17.13■□□□□ 0.33
VPS28-206ENST00000526734 TMPRSS2O15393 492 aa17.13■□□□□ 0.33
VPS28-206ENST00000526734 SULT1C4O75897 302 aa17.13■□□□□ 0.33
VPS28-206ENST00000526734 MTNR1AP48039 350 aa17.13■□□□□ 0.33
VPS28-206ENST00000526734 SLC25A30Q5SVS4 291 aa17.13■□□□□ 0.33
VPS28-206ENST00000526734 ATPAF1Q5TC12 328 aaPredicted RBP17.13■□□□□ 0.33
VPS28-206ENST00000526734 MEDAGQ5VYS4 303 aa17.13■□□□□ 0.33
VPS28-206ENST00000526734 CCDC54Q8NEL0 328 aa17.13■□□□□ 0.33
VPS28-206ENST00000526734 EME1Q96AY2 570 aa17.13■□□□□ 0.33
VPS28-206ENST00000526734 MS4A7Q9GZW8 240 aaPredicted RBP17.13■□□□□ 0.33
VPS28-206ENST00000526734 PPP1R3EQ9H7J1 279 aa17.13■□□□□ 0.33
VPS28-206ENST00000526734 DNAJB11Q9UBS4 358 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms