RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 XPNPEP2O43895 674 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 GMDSO60547 372 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 CDC14BO60729 498 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 DHRS3O75911 302 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 RGS9O75916 674 aaPredicted RBP8.55□□□□□ -1.04
VPS28-204ENST00000526054 IGLV3-1P01715 115 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 UBCP0CG48 685 aaKnown RBP8.55□□□□□ -1.04
VPS28-204ENST00000526054 CA6P23280 308 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 CRYBB2P43320 205 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 OR12D2P58182 307 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 SLC3A1Q07837 685 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 HFEQ30201 348 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 AVPI1Q5T686 147 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 TMPRSS11AQ6ZMR5 421 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 AHSA2Q719I0 299 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 DOK3Q7L591 496 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 CATSPERDQ86XM0 798 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 STX19Q8N4C7 294 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 KLHL36Q8N4N3 616 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 CELF2-AS1Q8N7Q2 184 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 SPERTQ8NA61 448 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 BPIFB6Q8NFQ5 453 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 OR8S1Q8NH09 359 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 OR51E1Q8TCB6 317 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 ZNF418Q8TF45 676 aaPredicted RBP8.55□□□□□ -1.04
VPS28-204ENST00000526054 ZFAND2BQ8WV99 257 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 ITLN1Q8WWA0 313 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 RORBQ92753 470 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 GGHQ92820 318 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 FAM71F1Q96KD3 344 aaPredicted RBP8.55□□□□□ -1.04
VPS28-204ENST00000526054 MEGF10Q96KG7 1140 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 LYZL4Q96KX0 146 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 OR2V2Q96R30 315 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 PAPOLGQ9BWT3 736 aaKnown RBP8.55□□□□□ -1.04
VPS28-204ENST00000526054 SCN3BQ9NY72 215 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 UBAP1Q9NZ09 502 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 PSORS1C1Q9UIG5 152 aa8.55□□□□□ -1.04
VPS28-204ENST00000526054 ZNF816-ZNF321PA0A0X1KG74 233 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 CLDN25C9JDP6 229 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 F5H5P2 479 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 H0YL77 283 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 IFNL4K9M1U5 179 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 SLC1A7O00341 560 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 P2RY10O00398 339 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 TNFAIP8O95379 198 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 HLA-DPB1P04440 258 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 RPSAP08865 295 aaKnown RBP8.54□□□□□ -1.04
VPS28-204ENST00000526054 LIMS3P0CW19 117 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 LIMS4P0CW20 117 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 EPHA1P21709 976 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 CFPP27918 469 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 PSMB10P40306 273 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 CD200P41217 278 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 GBX2P52951 348 aaPredicted RBP8.54□□□□□ -1.04
VPS28-204ENST00000526054 LMO4P61968 165 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 MVKQ03426 396 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 RIPPLY1Q0D2K3 151 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 ST3GAL4Q11206 333 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 WDR38Q5JTN6 314 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 RBM48Q5RL73 367 aaKnown RBP8.54□□□□□ -1.04
VPS28-204ENST00000526054 C6orf141Q5SZD1 244 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 ZBTB37Q5TC79 503 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 LAIR2Q6ISS4 152 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 FAHD2BQ6P2I3 314 aaPredicted RBP8.54□□□□□ -1.04
VPS28-204ENST00000526054 FDX2Q6P4F2 183 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 TEX29Q8N6K0 151 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 CCDC54Q8NEL0 328 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 OR2G2Q8NGZ5 317 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 PPP1R14AQ96A00 147 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 RAB39BQ96DA2 213 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 PELI1Q96FA3 418 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 FAHD2AQ96GK7 314 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 TIMD4Q96H15 378 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 ZNF649Q9BS31 505 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 YTHDF1Q9BYJ9 559 aaKnown RBP8.54□□□□□ -1.04
VPS28-204ENST00000526054 ZNF665Q9H7R5 613 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 PLEKHA1Q9HB21 404 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 C14orf119Q9NWQ9 140 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 ENPP5Q9UJA9 477 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 BLOC1S6Q9UL45 172 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 SLC22A13Q9Y226 551 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 CAB39Q9Y376 341 aaPredicted RBP8.54□□□□□ -1.04
VPS28-204ENST00000526054 TPRKBQ9Y3C4 175 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 MPC1Q9Y5U8 109 aa8.54□□□□□ -1.04
VPS28-204ENST00000526054 TENM1Q9UKZ4 2725 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 LOC105371242A0A075B767 164 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 A0A0G2JMP0 313 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 A0A0X1KG70 313 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 LOC107986453A0A1B0GWG9 222 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 MAGEA13PA6NCF6 341 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 LRRC30A6NM36 301 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 DHRS7CA6NNS2 312 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 MYL12BO14950 172 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 SYT7O43581 403 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 CST4P01036 141 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 CCDC159P0C7I6 412 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 ZNF12P17014 697 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 CCL1P22362 96 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 ACKR3P25106 362 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 KIR3DL2P43630 455 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms