RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TBL1XO60907 577 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 TDGF1P13385 188 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 BTN3A2P78410 334 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 RPL19P84098 196 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 LDLRAD2Q5SZI1 272 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 ERASQ7Z444 233 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 SGPP2Q8IWX5 399 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 TIFAQ96CG3 184 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 SLC22A13Q9Y226 551 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 MYO16Q9Y6X6 1858 aa10.71□□□□□ -0.7
LIMCH1-213ENST00000511496 IGLV3-16A0A075B6K0 115 aa10.71□□□□□ -0.7
LIMCH1-213ENST00000511496 TRAV34A0A0B4J273 112 aa10.71□□□□□ -0.7
LIMCH1-213ENST00000511496 C1orf105O95561 183 aa10.71□□□□□ -0.7
LIMCH1-213ENST00000511496 FGF8P55075 233 aaPredicted RBP10.71□□□□□ -0.7
LIMCH1-213ENST00000511496 TMEM176BQ3YBM2 270 aaPredicted RBP10.71□□□□□ -0.7
LIMCH1-213ENST00000511496 FBXO22Q8NEZ5 403 aa10.71□□□□□ -0.7
LIMCH1-213ENST00000511496 OR6N2Q8NGY6 317 aa10.71□□□□□ -0.7
LIMCH1-213ENST00000511496 AQP3Q92482 292 aa10.71□□□□□ -0.7
LIMCH1-213ENST00000511496 CORO2AQ92828 525 aa10.71□□□□□ -0.7
LIMCH1-213ENST00000511496 CNTD2Q9H8S5 307 aa10.71□□□□□ -0.7
LIMCH1-213ENST00000511496 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.71□□□□□ -0.7
LIMCH1-213ENST00000511496 RNF181Q9P0P0 153 aa10.71□□□□□ -0.7
LIMCH1-213ENST00000511496 PPP5D1E7EU14 171 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 CTSHP09668 335 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 SUPT4H1P63272 117 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 TAF9Q16594 264 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 OR5L2Q8NGL0 311 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 OR2G3Q8NGZ4 309 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 DCBLD2Q96PD2 775 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 NUDT9Q9BW91 350 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 C6orf106Q9H6K1 298 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 TRBV5-7A0A0A0MS05 114 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 SMIM35A0A1B0GVV1 85 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 GPR137BO60478 399 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 ZNF41P51814 821 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 MRPL2Q5T653 305 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 UNQ5815/PRO19632Q6UWF5 114 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 LRRC69Q6ZNQ3 347 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 Q6ZVL8 140 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 RNF44Q7L0R7 432 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 HOGA1Q86XE5 327 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 EXD3Q8N9H8 876 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 OR2I1PQ8NGU4 316 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 CNRIP1Q96F85 164 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 SRD5A3Q9H8P0 318 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 TAS2R4Q9NYW5 299 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 ZNF831Q5JPB2 1677 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 SDCBPO00560 298 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 OR56A1Q8NGH5 318 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 PLSCR2Q9NRY7 297 aa10.7□□□□□ -0.7
LIMCH1-213ENST00000511496 PLXNB2O15031 1838 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 TRBV24-1A0A075B6N3 115 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 A8MVM7 634 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 F6UZH7 168 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 CHRM2P08172 466 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 SPINT3P49223 89 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 ICAM4Q14773 271 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 DLK2Q6UY11 383 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 DPY19L4Q7Z388 723 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 ADGRE4PQ86SQ3 457 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 OR52E1Q8NGJ3 308 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 DYRK2Q92630 601 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 MS4A8Q9BY19 250 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 ZNF430Q9H8G1 570 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 MTHFD2LQ9H903 347 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 TAC3Q9UHF0 121 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 AK3Q9UIJ7 227 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 SLC25A13Q9UJS0 675 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 GPR132Q9UNW8 380 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 XIRP2A4UGR9 3374 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 SCN2AQ99250 2005 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 TICRRQ7Z2Z1 1910 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 AQP7P3A6NL99 342 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 VAMP5O95183 116 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 OPN1MWP04001 364 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 OPN1MW2P0DN77 364 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 OPN1MW3P0DN78 364 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 FPR2P25090 351 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 HIST1H3AP68431 136 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 MRPL49Q13405 166 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 SPRED2Q7Z698 418 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 FNDC9Q8TBE3 224 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 WFDC5Q8TCV5 224 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 VN1R17PQ8TDU5 208 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 WBP2Q969T9 261 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 MCHR2Q969V1 340 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 VAMP8Q9BV40 100 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 ZNF552Q9H707 407 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 B4GALT6Q9UBX8 382 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 MDC1Q14676 2089 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 DOCK9Q9BZ29 2069 aa10.69□□□□□ -0.7
LIMCH1-213ENST00000511496 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 TNFSF13O75888 250 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 NDUFB2O95178 105 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 PPBPP02775 128 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 CTSAP10619 480 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 BMI1P35226 326 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 P2RY1P47900 373 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 ZNF260Q3ZCT1 412 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 GRINAQ7Z429 371 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms