RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 SPANXN4Q5MJ08 99 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 THEM4Q5T1C6 240 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 LRIF1Q5T3J3 769 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 KRT80Q6KB66 452 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 METAP1DQ6UB28 335 aaPredicted RBP3.2□□□□□ -1.9
USP54-217ENST00000498213 ZNF836Q6ZNA1 936 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 GDPGP1Q6ZNW5 385 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 ZCCHC23Q6ZST2 131 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 HIST3H2AQ7L7L0 130 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 SLC16A14Q7RTX9 510 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 CLECL1Q8IZS7 167 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 ANKFN1Q8N957 763 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 RBM15BQ8NDT2 890 aaKnown RBP3.2□□□□□ -1.9
USP54-217ENST00000498213 DEFB108BQ8NET1 73 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 OR5L1Q8NGL2 311 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 RAB8BQ92930 207 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 HIST1H2ACQ93077 130 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 RASD2Q96D21 266 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 MAELQ96JY0 434 aaKnown RBP3.2□□□□□ -1.9
USP54-217ENST00000498213 ZNF583Q96ND8 569 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 DUX3Q96PT4 197 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 SORT1Q99523 831 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 SH3GL1Q99961 368 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 PAIP2Q9BPZ3 127 aaKnown RBP3.2□□□□□ -1.9
USP54-217ENST00000498213 KLHDC3Q9BQ90 382 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 SIKE1Q9BRV8 207 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 ZNF426Q9BUY5 554 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 C1orf50Q9BV19 199 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 CDCA4Q9BXL8 241 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 MRPL13Q9BYD1 178 aaKnown RBP3.2□□□□□ -1.9
USP54-217ENST00000498213 TRIM15Q9C019 465 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 DPAGT1Q9H3H5 408 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 PATZ1Q9HBE1 687 aaKnown RBP3.2□□□□□ -1.9
USP54-217ENST00000498213 NANSQ9NR45 359 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 TMEM106BQ9NUM4 274 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 NKIRAS1Q9NYS0 192 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 TAAR3PQ9P1P4 343 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 ZMAT5Q9UDW3 170 aaKnown RBP3.2□□□□□ -1.9
USP54-217ENST00000498213 TCF19Q9Y242 345 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 TIMM10BQ9Y5J6 103 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 IGKV1D-42A0A075B6H8 117 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 KIR2DS1A0A191URI9 304 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 A0A1B0GWA3 101 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 A0A1W2PS18 150 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 GAGE10A6NGK3 116 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 M0R3G1 203 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 NDUFAB1O14561 156 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 ENSAO43768 121 aaKnown RBP3.19□□□□□ -1.9
USP54-217ENST00000498213 SNX3O60493 162 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 SNNO75324 88 aaPredicted RBP3.19□□□□□ -1.9
USP54-217ENST00000498213 CPSF4O95639 269 aaKnown RBP3.19□□□□□ -1.9
USP54-217ENST00000498213 IGHV1-46P01743 117 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 IGHV2-70P01814 119 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 HLA-HP01893 362 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 PRSS1P07477 247 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 CST2P09228 141 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 MMP7P09237 267 aaPredicted RBP3.19□□□□□ -1.9
USP54-217ENST00000498213 TSPAN19P0C672 248 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 ASAH2BP0C7U1 165 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 PGA4P0DJD7 388 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 PGA3P0DJD8 388 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 B4GALT1P15291 398 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 PAICSP22234 425 aaKnown RBP3.19□□□□□ -1.9
USP54-217ENST00000498213 COL8A2P25067 703 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 STOMP27105 288 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 TGFBR2P37173 567 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 ALDH3B1P43353 468 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 RPS5P46782 204 aaKnown RBP3.19□□□□□ -1.9
USP54-217ENST00000498213 SLC1A6P48664 564 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 SRP9P49458 86 aaKnown RBP3.19□□□□□ -1.9
USP54-217ENST00000498213 GDI2P50395 445 aaKnown RBP3.19□□□□□ -1.9
USP54-217ENST00000498213 STX1BP61266 288 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 RPP30P78346 268 aaKnown RBP3.19□□□□□ -1.9
USP54-217ENST00000498213 HSF2Q03933 536 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 RBM39Q14498 530 aaKnown RBP3.19□□□□□ -1.9
USP54-217ENST00000498213 CHI3L2Q15782 390 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 SNCBQ16143 134 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 ZNF74Q16587 644 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 GPR157Q5UAW9 335 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 C9orf135Q5VTT2 229 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 GGNBP1Q5YKI7 109 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 ZNF620Q6ZNG0 422 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 C1orf122Q6ZSJ8 110 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 SLC35D2Q76EJ3 337 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 PIGWQ7Z7B1 504 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 SATL1Q86VE3 508 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 ZNF584Q8IVC4 421 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 WDFY1Q8IWB7 410 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 SKA3Q8IX90 412 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 RNF113BQ8IZP6 322 aaKnown RBP3.19□□□□□ -1.9
USP54-217ENST00000498213 Q8NFD4 153 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 OR52E2Q8NGJ4 325 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 OR5R1Q8NH85 324 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 KLF14Q8TD94 323 aaPredicted RBP3.19□□□□□ -1.9
USP54-217ENST00000498213 TMEM255BQ8WV15 326 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 C10orf82Q8WW14 230 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 DYDC1Q8WWB3 177 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 PTP4A1Q93096 173 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 YIPF5Q969M3 257 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 TAAR8Q969N4 342 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms