RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ADRA2AP08913 450 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 PRF1P14222 555 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 RAC2P15153 192 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 BMP5P22003 454 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 VEGFCP49767 419 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 HIKESHIQ53FT3 197 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 ATAD3CQ5T2N8 411 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 LILRB2Q8N423 598 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 ACBD4Q8NC06 268 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 SNAPC3Q92966 411 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 BARHL1Q9BZE3 327 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 RHOFQ9HBH0 211 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 NPAP1Q9NZP6 1156 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 V9GYS6 101 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 PLATP00750 562 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 NUP62P37198 522 aaPredicted RBP7.3□□□□□ -1.24
USP54-215ENST00000497106 SRP9P49458 86 aaKnown RBP7.3□□□□□ -1.24
USP54-215ENST00000497106 HERV-K104P61576 105 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 PRDX4Q13162 271 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 INSL4Q14641 139 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 NKPD1Q17RQ9 610 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 CDNFQ49AH0 187 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 TIMM23BQ5SRD1 257 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 LINC00596Q86U02 117 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 OR10R2Q8NGX6 335 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 PPP1R14AQ96A00 147 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 C1QTNF5Q9BXJ0 243 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 EGLN1Q9GZT9 426 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 ESRP2Q9H6T0 727 aaKnown RBP7.3□□□□□ -1.24
USP54-215ENST00000497106 PLSCR4Q9NRQ2 329 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 ZNF629Q9UEG4 869 aaPredicted RBP7.3□□□□□ -1.24
USP54-215ENST00000497106 hCG_1807616A0A1W2PRN6 198 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 ZNF850A8MQ14 1090 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 ICMTO60725 284 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 S100A6P06703 90 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 PTGFRP43088 359 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 KIR2DL3P43628 341 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 C9orf106Q8NAJ2 232 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 OR5A2Q8NGI9 324 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 DHRS9Q9BPW9 319 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 OR10A4Q9H209 315 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 OR51B6Q9H340 312 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 ZNF286AQ9HBT8 521 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 ZNF701Q9NV72 531 aaPredicted RBP7.3□□□□□ -1.24
USP54-215ENST00000497106 KCNIP1Q9NZI2 227 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 EDARQ9UNE0 448 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 SDK2Q58EX2 2172 aa7.3□□□□□ -1.24
USP54-215ENST00000497106 TMEM272A0A1B0GTI8 110 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 A0A1B0GUH1 482 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 CD300LBA8K4G0 201 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 DIRAS3O95661 229 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 PGAM2P15259 253 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 CXorf67Q86X51 503 aaPredicted RBP7.29□□□□□ -1.24
USP54-215ENST00000497106 OR13G1Q8NGZ3 307 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 HPS1Q92902 700 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 CHST6Q9GZX3 395 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 MRPL15Q9P015 296 aaKnown RBP7.29□□□□□ -1.24
USP54-215ENST00000497106 ZNF221Q9UK13 617 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 MCRIP1C9JLW8 97 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 KLK2P20151 261 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 BLVRBP30043 206 aaPredicted RBP7.29□□□□□ -1.24
USP54-215ENST00000497106 SFRP5Q5T4F7 317 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 TRAPPC6BQ86SZ2 158 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 FAM169BQ8N8A8 192 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 OR51F2Q8NH61 342 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 SGK3Q96BR1 496 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 NEURL2Q9BR09 285 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 DYNLRB1Q9NP97 96 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 TRANK1O15050 2925 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 A0A0G2JMP0 313 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 A0A0X1KG70 313 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 ZSCAN5BA6NJL1 495 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 OR5H1A6NKK0 313 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 E9PLN8 166 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 PATE4P0C8F1 98 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 WT1P19544 449 aaPredicted RBP7.29□□□□□ -1.24
USP54-215ENST00000497106 GABRR1P24046 479 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 RPS11P62280 158 aaKnown RBP eCLIP7.29□□□□□ -1.24
USP54-215ENST00000497106 ABCA11PQ4W5N1 156 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 C4orf46Q504U0 113 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 SIAH3Q8IW03 269 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 OSR2Q8N2R0 312 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 OR4M2Q8NGB6 313 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 OR10AC1Q8NH08 325 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 CMSS1Q9BQ75 279 aaKnown RBP7.29□□□□□ -1.24
USP54-215ENST00000497106 VKORC1Q9BQB6 163 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 PLSCR2Q9NRY7 297 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 COMMD9Q9P000 198 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 TRAV8-7A0A075B6U6 113 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 LRRC30A6NM36 301 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 CCNKO75909 580 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 ANXA3P12429 323 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 CRYGSP22914 178 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 BTG1P62324 171 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 SAXO1Q8IYX7 474 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 OR52N4Q8NGI2 321 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 ADAT1Q9BUB4 502 aaKnown RBP7.29□□□□□ -1.24
USP54-215ENST00000497106 OPN3Q9H1Y3 402 aaPredicted RBP7.29□□□□□ -1.24
USP54-215ENST00000497106 CXXC4Q9H2H0 198 aa7.29□□□□□ -1.24
USP54-215ENST00000497106 RBMX2Q9Y388 322 aaKnown RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms