RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ASB13Q8WXK3 278 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ROBO4Q8WZ75 1007 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PELI1Q96FA3 418 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 REG4Q9BYZ8 158 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SLC5A6Q9Y289 635 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TMEM14AQ9Y6G1 99 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FITM1A5D6W6 292 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CYB5BO43169 146 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 DFFBO76075 338 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 EDN3P14138 238 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CTLA4P16410 223 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CALCRP30988 508 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CCL11P51671 97 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 RAB1AP62820 205 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ZNF574Q6ZN55 896 aaPredicted RBP9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ANKRD37Q7Z713 158 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PLPP5Q8NEB5 264 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OR5M8Q8NGP6 311 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CPNE4Q96A23 557 aaPredicted RBP9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SMIM19Q96E16 107 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SLC41A2Q96JW4 573 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SF3B6Q9Y3B4 125 aaKnown RBP9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PCDHGA5Q9Y5G8 931 aa9.6□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 A0A1B0GTQ1 180 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ANKRD20A5PA0PJZ0 165 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 MPIG6BO95866 241 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 LCATP04180 440 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 DCAF7P61962 342 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 GNMTQ14749 295 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CDK5R1Q15078 307 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 COX15Q7KZN9 410 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OR9K2Q8NGE7 335 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 HAS2Q92819 552 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 NIPSNAP3BQ9BS92 247 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CALHM2Q9HA72 323 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FRG2CA6NGY1 282 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SEC14L6B5MCN3 397 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 BHLHE40O14503 412 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SLC31A2O15432 143 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 GLCEO94923 617 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ZFPL1O95159 310 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 LIMS1P48059 325 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PKIAP61925 76 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TMPRSS11FQ6ZWK6 438 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 D2HGDHQ8N465 521 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FNDC9Q8TBE3 224 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ZNRF4Q8WWF5 429 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 MIB2Q96AX9 1013 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 BSCL2Q96G97 398 aaPredicted RBP9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ALKBH3Q96Q83 286 aaPredicted RBP9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 GGACTQ9BVM4 153 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 C12orf49Q9H741 205 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 MYOTQ9UBF9 498 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SPTBN4Q9H254 2564 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TECTAO75443 2155 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 A0A096LPE4 126 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 A0A1W2PPZ6 126 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SHISA3A0PJX4 238 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CXorf65A6NEN9 183 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PLPP2O43688 288 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TNFSF15O95150 251 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 DDTP30046 118 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 DIO1P49895 249 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FUT7Q11130 342 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 DHRS7BQ6IAN0 325 aaPredicted RBP9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 MAMSTRQ6ZN01 415 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ARIH2OSQ8N7S6 290 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OR51A4Q8NGJ6 313 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FAM3DQ96BQ1 224 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FGGYQ96C11 551 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ADGRL4Q9HBW9 690 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ZNF701Q9NV72 531 aaPredicted RBP9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ABI3Q9P2A4 366 aa9.59□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PMS2P1A4D2B8 440 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 CBY3A6NI87 242 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SHISA7A6NL88 538 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 GSTZ1O43708 216 aaPredicted RBP9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 CD37P11049 281 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 CD79AP11912 226 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SERPINA2P20848 420 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SLC26A5P58743 744 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 RPL27P61353 136 aaKnown RBP9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 ARG2P78540 354 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 HSF1Q00613 529 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 MYBPHQ13203 477 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 WIPI1Q5MNZ9 446 aaPredicted RBP9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 PMS2CLQ68D20 193 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SPINK14Q6IE38 97 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 RHBDD2Q6NTF9 364 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 TMPRSS7Q7RTY8 843 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 TEX19Q8NA77 164 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OR5T1Q8NG75 326 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OR5H2Q8NGV7 314 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 ZNF845Q96IR2 970 aaPredicted RBP9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 NRIP2Q9BQI9 281 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 ULBP2Q9BZM5 246 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 LANCL2Q9NS86 450 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 STEAP1Q9UHE8 339 aa9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 MRPS18BQ9Y676 258 aaKnown RBP9.58□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 AUP1Q9Y679 476 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms