RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 MRGPRGQ86SM5 289 aa12.27□□□□□ -0.44
CUX1-209ENST00000487284 C1orf162Q8NEQ5 155 aaPredicted RBP12.27□□□□□ -0.44
CUX1-209ENST00000487284 A0A0A6YYH2 397 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 CIB4A0PJX0 185 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 FUOMA2VDF0 154 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 C5orf49A4QMS7 147 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 GGT3PA6NGU5 568 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 A6NJ64 397 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 GABARAPH6UMI1 98 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 LYRM1O43325 122 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 HCKP08631 526 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 HOXB1P14653 301 aaPredicted RBP12.26□□□□□ -0.45
CUX1-209ENST00000487284 GSK3AP49840 483 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 FAM3AP98173 230 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 RIPPLY1Q0D2K3 151 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 P2RY6Q15077 328 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 UBE2V2Q15819 145 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 ZNF57Q68EA5 555 aaPredicted RBP12.26□□□□□ -0.45
CUX1-209ENST00000487284 TMEM42Q69YG0 159 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 CRIP3Q6Q6R5 217 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 RNF144BQ7Z419 303 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 MDP1Q86V88 176 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 ITFG2Q969R8 447 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 APOBEC3DQ96AK3 386 aaPredicted RBP12.26□□□□□ -0.45
CUX1-209ENST00000487284 ZC3HAV1LQ96H79 300 aaKnown RBP12.26□□□□□ -0.45
CUX1-209ENST00000487284 DIABLOQ9NR28 239 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 COQ3Q9NZJ6 369 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 JKAMPQ9P055 326 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 KDM4BO94953 1096 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 SERPINA5P05154 406 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 CD3GP09693 182 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 CHRNB4P30926 498 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 BCAP31P51572 246 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 ZBTB37Q5TC79 503 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 MZT2BQ6NZ67 158 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 DNM1P46Q6ZS02 220 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 C1orf147Q96MC9 270 aaPredicted RBP12.26□□□□□ -0.45
CUX1-209ENST00000487284 NEDD4LQ96PU5 975 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 SPACA5Q96QH8 159 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 AUNIPQ9H7T9 357 aa12.26□□□□□ -0.45
CUX1-209ENST00000487284 RBFOX1Q9NWB1 397 aaKnown RBP12.26□□□□□ -0.45
CUX1-209ENST00000487284 ERRFI1Q9UJM3 462 aaPredicted RBP12.26□□□□□ -0.45
CUX1-209ENST00000487284 MRPS28Q9Y2Q9 187 aaKnown RBP12.26□□□□□ -0.45
CUX1-209ENST00000487284 TMEM14DPA8MWL7 114 aa12.25□□□□□ -0.45
CUX1-209ENST00000487284 UBR5O95071 2799 aaPredicted RBP12.25□□□□□ -0.45
CUX1-209ENST00000487284 VSIG8P0DPA2 414 aa12.25□□□□□ -0.45
CUX1-209ENST00000487284 CCL2P13500 99 aa12.25□□□□□ -0.45
CUX1-209ENST00000487284 ZNF14P17017 642 aaPredicted RBP12.25□□□□□ -0.45
CUX1-209ENST00000487284 APLNRP35414 380 aa12.25□□□□□ -0.45
CUX1-209ENST00000487284 ALDH3B1P43353 468 aa12.25□□□□□ -0.45
CUX1-209ENST00000487284 FAM27E3Q08E93 113 aa12.25□□□□□ -0.45
CUX1-209ENST00000487284 UNC119Q13432 240 aa12.25□□□□□ -0.45
CUX1-209ENST00000487284 CDSNQ15517 529 aa12.25□□□□□ -0.45
CUX1-209ENST00000487284 AWAT2Q6E213 333 aa12.25□□□□□ -0.45
CUX1-209ENST00000487284 OR10K2Q6IF99 312 aa12.25□□□□□ -0.45
CUX1-209ENST00000487284 BHLHA15Q7RTS1 189 aaPredicted RBP12.25□□□□□ -0.45
CUX1-209ENST00000487284 OR2W3Q7Z3T1 314 aa12.25□□□□□ -0.45
CUX1-209ENST00000487284 ANGPTL5Q86XS5 388 aa12.25□□□□□ -0.45
CUX1-209ENST00000487284 PAQR4Q8N4S7 273 aaPredicted RBP12.25□□□□□ -0.45
CUX1-209ENST00000487284 OR52I2Q8NH67 350 aa12.25□□□□□ -0.45
CUX1-209ENST00000487284 SPSB1Q96BD6 273 aa12.25□□□□□ -0.45
CUX1-209ENST00000487284 ITPKCQ96DU7 683 aa12.25□□□□□ -0.45
CUX1-209ENST00000487284 ATG5Q9H1Y0 275 aa12.25□□□□□ -0.45
CUX1-209ENST00000487284 RAB22AQ9UL26 194 aa12.25□□□□□ -0.45
CUX1-209ENST00000487284 RBMX2Q9Y388 322 aaKnown RBP12.25□□□□□ -0.45
CUX1-209ENST00000487284 PRR14LQ5THK1 2151 aa12.24□□□□□ -0.45
CUX1-209ENST00000487284 FAM90A27PA6NNH2 459 aa12.24□□□□□ -0.45
CUX1-209ENST00000487284 PYCARD-AS1I3L0S3 204 aa12.24□□□□□ -0.45
CUX1-209ENST00000487284 FAM157BP0CG42 384 aa12.24□□□□□ -0.45
CUX1-209ENST00000487284 UBBP0CG47 229 aa12.24□□□□□ -0.45
CUX1-209ENST00000487284 PSMB1P20618 241 aaKnown RBP12.24□□□□□ -0.45
CUX1-209ENST00000487284 CCNOP22674 350 aa12.24□□□□□ -0.45
CUX1-209ENST00000487284 OR3A4PP47883 348 aa12.24□□□□□ -0.45
CUX1-209ENST00000487284 UBE2NP61088 152 aaKnown RBP12.24□□□□□ -0.45
CUX1-209ENST00000487284 CNN3Q15417 329 aaKnown RBP12.24□□□□□ -0.45
CUX1-209ENST00000487284 KISS1Q15726 138 aa12.24□□□□□ -0.45
CUX1-209ENST00000487284 RNASE12Q5GAN4 147 aaKnown RBP12.24□□□□□ -0.45
CUX1-209ENST00000487284 CLVS2Q5SYC1 327 aa12.24□□□□□ -0.45
CUX1-209ENST00000487284 MTFR2Q6P444 385 aa12.24□□□□□ -0.45
CUX1-209ENST00000487284 UBASH3BQ8TF42 649 aa12.24□□□□□ -0.45
CUX1-209ENST00000487284 FCAMRQ8WWV6 532 aa12.24□□□□□ -0.45
CUX1-209ENST00000487284 GCDHQ92947 438 aaPredicted RBP12.24□□□□□ -0.45
CUX1-209ENST00000487284 PHF21AQ96BD5 680 aa12.24□□□□□ -0.45
CUX1-209ENST00000487284 MS4A3Q96HJ5 214 aa12.24□□□□□ -0.45
CUX1-209ENST00000487284 REPIN1Q9BWE0 567 aaKnown RBP12.24□□□□□ -0.45
CUX1-209ENST00000487284 OPA3Q9H6K4 179 aa12.24□□□□□ -0.45
CUX1-209ENST00000487284 SPTBN1Q01082 2364 aaKnown RBP12.24□□□□□ -0.45
CUX1-209ENST00000487284 TRAV18A0A075B6X5 111 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 ZNF816-ZNF321PA0A0X1KG74 233 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 A0A1W2PR80 420 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 ORC5O43913 435 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 GMDSO60547 372 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 ICMTO60725 284 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 NAT2P11245 290 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 PRKACBP22694 351 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 CCKARP32238 428 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 GDNFP39905 211 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 WNT5AP41221 380 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 KIR2DL3P43628 341 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 ASCL1P50553 236 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms