RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ATP6V1B1P15313 513 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 ZNF19P17023 458 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 HNF1AP20823 631 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 CD80P33681 288 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 ACTA2P62736 377 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 ACTG2P63267 376 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 CSNK2BP67870 215 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 RIPPLY1Q0D2K3 151 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 RAB40BQ12829 278 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 TMEM155Q4W5P6 130 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 DMRTC1Q5HYR2 192 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 WDR38Q5JTN6 314 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 CEP78Q5JTW2 689 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 IL17RELQ6ZVW7 336 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 GLCCI1Q86VQ1 547 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 LRRC28Q86X40 367 aaPredicted RBP12.39□□□□□ -0.43
USP4-212ENST00000486549 MUC20Q8N307 709 aaPredicted RBP12.39□□□□□ -0.43
USP4-212ENST00000486549 PRSS35Q8N3Z0 413 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 PLPP7Q8NBV4 271 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 DEFB108BQ8NET1 73 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 OR1M1Q8NGA1 313 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 OR52I1Q8NGK6 324 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 OR51F2Q8NH61 342 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 NRG4Q8WWG1 115 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 C4orf36Q96KX1 117 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 HIST1H2AAQ96QV6 131 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 SHARPINQ9H0F6 387 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 METTL17Q9H7H0 456 aaPredicted RBP12.39□□□□□ -0.43
USP4-212ENST00000486549 ABCB9Q9NP78 766 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 ENPP5Q9UJA9 477 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 PPIAL4AQ9Y536 164 aa12.39□□□□□ -0.43
USP4-212ENST00000486549 A0A1B0GTI1 187 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 A0A1B0GVI7 797 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 A6NIN4 97 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 CEACAM18A8MTB9 384 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 HTR1AP08908 422 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 GNAO1P09471 354 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 FAM157CP0CG43 387 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 THBS2P35442 1172 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 KIR3DL2P43630 455 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 DVL1P1P54792 670 aaPredicted RBP12.38□□□□□ -0.43
USP4-212ENST00000486549 ISL1P61371 349 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 ZNF154Q13106 437 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 IL18R1Q13478 541 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 KLHL22Q53GT1 634 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 PLCXD3Q63HM9 321 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 SFRP4Q6FHJ7 346 aaPredicted RBP12.38□□□□□ -0.43
USP4-212ENST00000486549 MOB3CQ70IA8 216 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 DOK3Q7L591 496 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 C8orf59Q8N0T1 100 aaPredicted RBP12.38□□□□□ -0.43
USP4-212ENST00000486549 HPSE2Q8WWQ2 592 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 OR5P3Q8WZ94 311 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 TMEM186Q96B77 213 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 MRPL48Q96GC5 212 aaKnown RBP12.38□□□□□ -0.43
USP4-212ENST00000486549 RNF170Q96K19 258 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 FGF23Q9GZV9 251 aaPredicted RBP12.38□□□□□ -0.43
USP4-212ENST00000486549 PATZ1Q9HBE1 687 aaKnown RBP12.38□□□□□ -0.43
USP4-212ENST00000486549 TMEM165Q9HC07 324 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 HIF1ANQ9NWT6 349 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 ERVK13-1Q9NX77 482 aa12.38□□□□□ -0.43
USP4-212ENST00000486549 KIAA1324LA8MWY0 1029 aaPredicted RBP12.37□□□□□ -0.43
USP4-212ENST00000486549 C3orf80F5H4A9 247 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 H0YAE9 185 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 CDIPTO14735 213 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 SYT7O43581 403 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 PLPP2O43688 288 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 IGHA1P01876 353 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 RPS2P15880 293 aaKnown RBP12.37□□□□□ -0.43
USP4-212ENST00000486549 EGR1P18146 543 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 GPM6AP51674 278 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 SEC61A1P61619 476 aaKnown RBP12.37□□□□□ -0.43
USP4-212ENST00000486549 LCN2P80188 198 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 GALEQ14376 348 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 CR1LQ2VPA4 569 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 ZNF404Q494X3 552 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 FAM120AOSQ5T036 256 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 KCTD20Q7Z5Y7 419 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 OR14K1Q8NGZ2 314 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 OR2G2Q8NGZ5 317 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 LRRC29Q8WV35 223 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 RPL3LQ92901 407 aaKnown RBP12.37□□□□□ -0.43
USP4-212ENST00000486549 TMEM246Q9BRR3 403 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 ISG20L2Q9H9L3 353 aaKnown RBP12.37□□□□□ -0.43
USP4-212ENST00000486549 PLEKHA1Q9HB21 404 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 GPR173Q9NS66 373 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 V9GYS6 101 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 ARHGAP32A7KAX9 2087 aa12.37□□□□□ -0.43
USP4-212ENST00000486549 IGHV3OR15-7A0A075B7D8 119 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 LOC107986453A0A1B0GWG9 222 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 TMEM210A6NLX4 147 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 ZNF732B4DXR9 585 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 NRASP01111 189 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 UBCP0CG48 685 aaKnown RBP12.36□□□□□ -0.43
USP4-212ENST00000486549 PCMT1P22061 227 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 CCL1P22362 96 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 AQP4P55087 323 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 NANOS3P60323 173 aaKnown RBP12.36□□□□□ -0.43
USP4-212ENST00000486549 GMFBP60983 142 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 CEACAM21Q3KPI0 293 aa12.36□□□□□ -0.43
USP4-212ENST00000486549 ZBTB37Q5TC79 503 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms