RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 PTGES3Q15185 160 aaKnown RBP11.66□□□□□ -0.54
UPF3A-204ENST00000475218 KCNJ8Q15842 424 aa11.66□□□□□ -0.54
UPF3A-204ENST00000475218 FAM76BQ5HYJ3 339 aa11.66□□□□□ -0.54
UPF3A-204ENST00000475218 WDR38Q5JTN6 314 aa11.66□□□□□ -0.54
UPF3A-204ENST00000475218 RBMS3Q6XE24 437 aaKnown RBP11.66□□□□□ -0.54
UPF3A-204ENST00000475218 C3orf56Q8N813 242 aa11.66□□□□□ -0.54
UPF3A-204ENST00000475218 CSNK2A3Q8NEV1 391 aa11.66□□□□□ -0.54
UPF3A-204ENST00000475218 PPP1R14AQ96A00 147 aa11.66□□□□□ -0.54
UPF3A-204ENST00000475218 CCL13Q99616 98 aa11.66□□□□□ -0.54
UPF3A-204ENST00000475218 PCGF1Q9BSM1 259 aa11.66□□□□□ -0.54
UPF3A-204ENST00000475218 WDR13Q9H1Z4 485 aa11.66□□□□□ -0.54
UPF3A-204ENST00000475218 SP140LQ9H930 580 aa11.66□□□□□ -0.54
UPF3A-204ENST00000475218 CENPVL3A0A0U1RRI6 287 aa11.65□□□□□ -0.54
UPF3A-204ENST00000475218 SRRM5B3KS81 715 aa11.65□□□□□ -0.54
UPF3A-204ENST00000475218 NDUFA2O43678 99 aa11.65□□□□□ -0.54
UPF3A-204ENST00000475218 SRSF10O75494 262 aaKnown RBP11.65□□□□□ -0.54
UPF3A-204ENST00000475218 SELLP14151 372 aa11.65□□□□□ -0.54
UPF3A-204ENST00000475218 MZT1Q08AG7 82 aa11.65□□□□□ -0.54
UPF3A-204ENST00000475218 SNAPC1Q16533 368 aa11.65□□□□□ -0.54
UPF3A-204ENST00000475218 BTN2A1Q7KYR7 527 aa11.65□□□□□ -0.54
UPF3A-204ENST00000475218 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.65□□□□□ -0.54
UPF3A-204ENST00000475218 FAM216BQ8N7L0 139 aa11.65□□□□□ -0.54
UPF3A-204ENST00000475218 RPL3LQ92901 407 aaKnown RBP11.65□□□□□ -0.54
UPF3A-204ENST00000475218 WDFY2Q96P53 400 aa11.65□□□□□ -0.54
UPF3A-204ENST00000475218 PKP2Q99959 881 aa11.65□□□□□ -0.54
UPF3A-204ENST00000475218 TTTY10Q9BZA0 68 aa11.65□□□□□ -0.54
UPF3A-204ENST00000475218 YIPF3Q9GZM5 350 aa11.65□□□□□ -0.54
UPF3A-204ENST00000475218 TRIM36Q9NQ86 728 aa11.65□□□□□ -0.54
UPF3A-204ENST00000475218 MGAM2Q2M2H8 2515 aa11.65□□□□□ -0.55
UPF3A-204ENST00000475218 TMPRSS2O15393 492 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 MUC1P15941 1255 aaPredicted RBP11.64□□□□□ -0.55
UPF3A-204ENST00000475218 RASSF2P50749 326 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 RPS7P62081 194 aaKnown RBP11.64□□□□□ -0.55
UPF3A-204ENST00000475218 ROM1Q03395 351 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 MFGE8Q08431 387 aaPredicted RBP11.64□□□□□ -0.55
UPF3A-204ENST00000475218 ATP6AP1Q15904 470 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 DMRTC1Q5HYR2 192 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 AADACL4Q5VUY2 407 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 CD276Q5ZPR3 534 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 STUMQ69YW2 141 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 LY6G5BQ8NDX9 201 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 OR5K1Q8NHB7 308 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 DNAJC9Q8WXX5 260 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 ZMAT3Q9HA38 289 aaKnown RBP11.64□□□□□ -0.55
UPF3A-204ENST00000475218 RPUSD1Q9UJJ7 312 aaKnown RBP11.64□□□□□ -0.55
UPF3A-204ENST00000475218 LAMP5Q9UJQ1 280 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 PCDHGB1Q9Y5G3 927 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 MPC1Q9Y5U8 109 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 ZAR1LA6NP61 321 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 MAGEB4O15481 346 aaPredicted RBP11.64□□□□□ -0.55
UPF3A-204ENST00000475218 HOXA3O43365 443 aaPredicted RBP11.64□□□□□ -0.55
UPF3A-204ENST00000475218 TOX4O94842 621 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 GNALP38405 381 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 MTNR1AP48039 350 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 TGM4P49221 684 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 C12orf73Q69YU5 71 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 ASRGL1Q7L266 308 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 KRT77Q7Z794 578 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 SCCPDHQ8NBX0 429 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 OR5T2Q8NGG2 359 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 OR8B4Q96RC9 309 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 NIPAL2Q9H841 368 aa11.64□□□□□ -0.55
UPF3A-204ENST00000475218 VWFP04275 2813 aa11.63□□□□□ -0.55
UPF3A-204ENST00000475218 A0A0U1RQV5 110 aa11.63□□□□□ -0.55
UPF3A-204ENST00000475218 P2RY10O00398 339 aa11.63□□□□□ -0.55
UPF3A-204ENST00000475218 RHBDL1O75783 438 aa11.63□□□□□ -0.55
UPF3A-204ENST00000475218 LIPFP07098 398 aa11.63□□□□□ -0.55
UPF3A-204ENST00000475218 ARF6P62330 175 aa11.63□□□□□ -0.55
UPF3A-204ENST00000475218 IL5RAQ01344 420 aa11.63□□□□□ -0.55
UPF3A-204ENST00000475218 MICBQ29980 383 aa11.63□□□□□ -0.55
UPF3A-204ENST00000475218 ATPAF1Q5TC12 328 aaPredicted RBP11.63□□□□□ -0.55
UPF3A-204ENST00000475218 SLX4IPQ5VYV7 408 aa11.63□□□□□ -0.55
UPF3A-204ENST00000475218 KDM4DQ6B0I6 523 aa11.63□□□□□ -0.55
UPF3A-204ENST00000475218 DEGS2Q6QHC5 323 aa11.63□□□□□ -0.55
UPF3A-204ENST00000475218 PIGCQ92535 297 aa11.63□□□□□ -0.55
UPF3A-204ENST00000475218 MICU1Q9BPX6 476 aa11.63□□□□□ -0.55
UPF3A-204ENST00000475218 ZNF747Q9BV97 191 aa11.63□□□□□ -0.55
UPF3A-204ENST00000475218 RTL8AQ9BWD3 113 aa11.63□□□□□ -0.55
UPF3A-204ENST00000475218 KIF17Q9P2E2 1029 aa11.63□□□□□ -0.55
UPF3A-204ENST00000475218 TMEM269A0A1B0GVZ9 245 aa11.62□□□□□ -0.55
UPF3A-204ENST00000475218 CALRP27797 417 aaKnown RBP11.62□□□□□ -0.55
UPF3A-204ENST00000475218 POLR2IP36954 125 aaKnown RBP11.62□□□□□ -0.55
UPF3A-204ENST00000475218 DLX1P56177 255 aa11.62□□□□□ -0.55
UPF3A-204ENST00000475218 GMFBP60983 142 aa11.62□□□□□ -0.55
UPF3A-204ENST00000475218 ESRRGP62508 458 aa11.62□□□□□ -0.55
UPF3A-204ENST00000475218 FOXL1Q12952 345 aa11.62□□□□□ -0.55
UPF3A-204ENST00000475218 GPR157Q5UAW9 335 aa11.62□□□□□ -0.55
UPF3A-204ENST00000475218 Q6YL49 198 aa11.62□□□□□ -0.55
UPF3A-204ENST00000475218 AMIGO2Q86SJ2 522 aa11.62□□□□□ -0.55
UPF3A-204ENST00000475218 PNLDC1Q8NA58 520 aaKnown RBP11.62□□□□□ -0.55
UPF3A-204ENST00000475218 OR10Z1Q8NGY1 313 aa11.62□□□□□ -0.55
UPF3A-204ENST00000475218 ST8SIA4Q92187 359 aa11.62□□□□□ -0.55
UPF3A-204ENST00000475218 SLC25A28Q96A46 364 aa11.62□□□□□ -0.55
UPF3A-204ENST00000475218 C12orf43Q96C57 262 aaKnown RBP11.62□□□□□ -0.55
UPF3A-204ENST00000475218 DUS3LQ96G46 650 aaKnown RBP11.62□□□□□ -0.55
UPF3A-204ENST00000475218 RNF170Q96K19 258 aa11.62□□□□□ -0.55
UPF3A-204ENST00000475218 PBOV1Q9GZY1 135 aa11.62□□□□□ -0.55
UPF3A-204ENST00000475218 GABARAPL1Q9H0R8 117 aa11.62□□□□□ -0.55
UPF3A-204ENST00000475218 ADGRL4Q9HBW9 690 aa11.62□□□□□ -0.55
UPF3A-204ENST00000475218 SNTG1Q9NSN8 517 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms