RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 DRAM1Q8N682 238 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 WDR31Q8NA23 367 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 FBXO36Q8NEA4 188 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 OR1L1Q8NH94 360 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 DCAKDQ8WVC6 231 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 RXFP2Q8WXD0 754 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 BAALCQ8WXS3 180 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 CDS1Q92903 461 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 TOP1MTQ969P6 601 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 RMI2Q96E14 147 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 FAM19A4Q96LR4 140 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 RDH12Q96NR8 316 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 KCNS3Q9BQ31 491 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 NUDT9Q9BW91 350 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 OSBPL11Q9BXB4 747 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 ZNF717Q9BY31 904 aaPredicted RBP1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 FBXO44Q9H4M3 255 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 CES1P1Q9UKY3 287 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 OR51B2Q9Y5P1 312 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 ZNF608Q9ULD9 1512 aaPredicted RBP1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 A0A1W2PPV4 95 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 CENPXA8MT69 81 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 ZNF701M0R085 212 aaPredicted RBP1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 LGALS9O00182 355 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 PSPHP1O15172 72 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 LCA5LO95447 670 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 PTTG1O95997 202 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 MBP02144 154 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 CRYGCP07315 174 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 ZNF14P17017 642 aaPredicted RBP1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 CELP19835 753 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 ARL2P36404 184 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 CMC4P56277 68 aaPredicted RBP1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 KDSRQ06136 332 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 INCA1Q0VD86 236 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 DMC1Q14565 340 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 WDR43Q15061 677 aaKnown RBP eCLIP1.55□□□□□ -2.165e-6■□□□□ 10.7
CCDC88A-212ENST00000474059 FAM222AQ5U5X8 452 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 STEAP4Q687X5 459 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 Q6ZSR6 202 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 SLC35D2Q76EJ3 337 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 NDUFAF7Q7L592 441 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 ERO1BQ86YB8 467 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 SLC30A8Q8IWU4 369 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 ZNF101Q8IZC7 436 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 TMEM105Q8N8V8 129 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 SPANXA2-OT1Q8N9U9 137 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 TMEM104Q8NE00 496 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 OR8D1Q8WZ84 308 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 CPNE4Q96A23 557 aaPredicted RBP1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 GABRG3Q99928 467 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 SULT4A1Q9BR01 284 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 CHCHD7Q9BUK0 85 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 EMC6Q9BV81 110 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 SFXN3Q9BWM7 321 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 ULBP2Q9BZM5 246 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 ARMC7Q9H6L4 198 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 MARCOQ9UEW3 520 aaPredicted RBP1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 LRRC42Q9Y546 428 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 WIF1Q9Y5W5 379 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 KPTNQ9Y664 436 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 SBNO1A3KN83 1393 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 DOCK9Q9BZ29 2069 aa1.55□□□□□ -2.16
CCDC88A-212ENST00000474059 SCN4AP35499 1836 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 CCL15-CCL14A0A0B4J2E2 113 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 IGHV1-3A0A0C4DH29 117 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 A0A1W2PRF3 423 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 A0A1W2PRM7 423 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 POLR1CO15160 346 aaPredicted RBP1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 GATBO75879 557 aaKnown RBP1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 CDRT1O95170 752 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 SNAI1O95863 264 aaPredicted RBP1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 IGKV1D-16P01601 117 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 RPN2P04844 631 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 HSPD1P10809 573 aaKnown RBP1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 PRKACBP22694 351 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 CXCR1P25024 350 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 PSMB5P28074 263 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 CSKP41240 450 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 CCL15Q16663 113 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 DNLZQ5SXM8 178 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 MFSD14CQ5VZR4 134 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 ASCL4Q6XD76 172 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 SLC35G3Q8N808 338 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 ST20-AS1Q8NBB2 130 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 OR51L1Q8NGJ5 315 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 ENKURQ8TC29 256 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 TFGQ92734 400 aaPredicted RBP1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 TMEM159Q96B96 161 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 NAPGQ99747 312 aaPredicted RBP1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 TMEM175Q9BSA9 504 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 PLA2G12AQ9BZM1 189 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 ARV1Q9H2C2 271 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 OR51B5Q9H339 312 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 ZSCAN16Q9H4T2 348 aaPredicted RBP1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 TDRD3Q9H7E2 651 aaKnown RBP1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 KIR3DX1Q9H7L2 352 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 PLEKHF2Q9H8W4 249 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 HEBP1Q9NRV9 189 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 TMEM100Q9NV29 134 aa1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms