RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 TMEM210A6NLX4 147 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 CDIPTO14735 213 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 AMY2BP19961 511 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 DCTDP32321 178 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 PRDX4Q13162 271 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 PDCD1Q15116 288 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 FAM76BQ5HYJ3 339 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 ATPAF1Q5TC12 328 aaPredicted RBP13.46□□□□□ -0.25
COL9A3-208ENST00000469802 METTL11BQ5VVY1 283 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 TMEM236Q5W0B7 351 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 FAHD1Q6P587 224 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 TMEM86BQ8N661 226 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 FAM216BQ8N7L0 139 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 LY6G5BQ8NDX9 201 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 OR10Z1Q8NGY1 313 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 ST8SIA4Q92187 359 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 TAF15Q92804 592 aaKnown RBP eCLIP13.46□□□□□ -0.25
COL9A3-208ENST00000469802 SEH1LQ96EE3 360 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 NRBF2Q96F24 287 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 DMRTB1Q96MA1 342 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 CCL13Q99616 98 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 PKP2Q99959 881 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 MICU1Q9BPX6 476 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 RTL8AQ9BWD3 113 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 UNKLQ9H9P5 680 aaKnown RBP13.46□□□□□ -0.25
COL9A3-208ENST00000469802 KIF17Q9P2E2 1029 aa13.46□□□□□ -0.25
COL9A3-208ENST00000469802 IGHV1-69DA0A0B4J2H0 117 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 POM121CA8CG34 1229 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 ZNF850A8MQ14 1090 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 PRR32B1ATL7 298 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 IGHV1-69P01742 117 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 MELTFP08582 738 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 APOFQ13790 326 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 DEGS2Q6QHC5 323 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 SLC36A1Q7Z2H8 476 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 GATAD2BQ8WXI9 593 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 ZDHHC16Q969W1 377 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 UTP4Q969X6 686 aaKnown RBP13.45□□□□□ -0.26
COL9A3-208ENST00000469802 YIPF3Q9GZM5 350 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 DNTTIP1Q9H147 329 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 ZNF696Q9H7X3 374 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 PAPOLBQ9NRJ5 636 aaKnown RBP13.45□□□□□ -0.26
COL9A3-208ENST00000469802 ACOXLQ9NUZ1 547 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 FAM206AQ9NX38 181 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 LAMP5Q9UJQ1 280 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 MMP24Q9Y5R2 645 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 KPTNQ9Y664 436 aa13.45□□□□□ -0.26
COL9A3-208ENST00000469802 A0A0U1RQV5 110 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 ACOD1A6NK06 481 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 DNAJC8O75937 253 aaPredicted RBP13.44□□□□□ -0.26
COL9A3-208ENST00000469802 IGLV3-1P01715 115 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 MDKP21741 143 aaPredicted RBP13.44□□□□□ -0.26
COL9A3-208ENST00000469802 TGM4P49221 684 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 CRISP1P54107 249 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 RPS7P62081 194 aaKnown RBP13.44□□□□□ -0.26
COL9A3-208ENST00000469802 ARF6P62330 175 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 ROM1Q03395 351 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 CDONQ4KMG0 1287 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 KRT77Q7Z794 578 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 SCCPDHQ8NBX0 429 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 BCAS4Q8TDM0 211 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 RPL3LQ92901 407 aaKnown RBP13.44□□□□□ -0.26
COL9A3-208ENST00000469802 ITFG2Q969R8 447 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 TMIGD2Q96BF3 282 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 FAM71F1Q96KD3 344 aaPredicted RBP13.44□□□□□ -0.26
COL9A3-208ENST00000469802 RAB3IPQ96QF0 476 aaPredicted RBP13.44□□□□□ -0.26
COL9A3-208ENST00000469802 TEX12Q9BXU0 123 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 CHIAQ9BZP6 476 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 SLITRK2Q9H156 845 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 WDR13Q9H1Z4 485 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 HAO2Q9NYQ3 351 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 POMT1Q9Y6A1 747 aa13.44□□□□□ -0.26
COL9A3-208ENST00000469802 ZNF816-ZNF321PA0A0X1KG74 233 aa13.43□□□□□ -0.26
COL9A3-208ENST00000469802 FAM181BA6NEQ2 426 aa13.43□□□□□ -0.26
COL9A3-208ENST00000469802 GPR37O15354 613 aa13.43□□□□□ -0.26
COL9A3-208ENST00000469802 DAPP51397 102 aa13.43□□□□□ -0.26
COL9A3-208ENST00000469802 HCCSP53701 268 aa13.43□□□□□ -0.26
COL9A3-208ENST00000469802 SNAPC1Q16533 368 aa13.43□□□□□ -0.26
COL9A3-208ENST00000469802 METAP1DQ6UB28 335 aaPredicted RBP13.43□□□□□ -0.26
COL9A3-208ENST00000469802 LDLRAD3Q86YD5 345 aa13.43□□□□□ -0.26
COL9A3-208ENST00000469802 ZDHHC23Q8IYP9 409 aa13.43□□□□□ -0.26
COL9A3-208ENST00000469802 KIR3DL3Q8N743 410 aa13.43□□□□□ -0.26
COL9A3-208ENST00000469802 C8orf46Q8TAG6 207 aa13.43□□□□□ -0.26
COL9A3-208ENST00000469802 LHX4Q969G2 390 aa13.43□□□□□ -0.26
COL9A3-208ENST00000469802 TEAD3Q99594 435 aa13.43□□□□□ -0.26
COL9A3-208ENST00000469802 CADM1Q9BY67 442 aaKnown RBP13.43□□□□□ -0.26
COL9A3-208ENST00000469802 CNTD2Q9H8S5 307 aa13.43□□□□□ -0.26
COL9A3-208ENST00000469802 COPS3Q9UNS2 423 aa13.43□□□□□ -0.26
COL9A3-208ENST00000469802 A0A1B0GVI7 797 aa13.42□□□□□ -0.26
COL9A3-208ENST00000469802 PRKYO43930 277 aa13.42□□□□□ -0.26
COL9A3-208ENST00000469802 MRPL3P09001 348 aaKnown RBP13.42□□□□□ -0.26
COL9A3-208ENST00000469802 SELLP14151 372 aa13.42□□□□□ -0.26
COL9A3-208ENST00000469802 RELBQ01201 579 aa13.42□□□□□ -0.26
COL9A3-208ENST00000469802 PTGES3Q15185 160 aaKnown RBP13.42□□□□□ -0.26
COL9A3-208ENST00000469802 LCN1P1Q5VSP4 162 aa13.42□□□□□ -0.26
COL9A3-208ENST00000469802 KCTD18Q6PI47 426 aaPredicted RBP13.42□□□□□ -0.26
COL9A3-208ENST00000469802 FIP1L1Q6UN15 594 aaKnown RBP13.42□□□□□ -0.26
COL9A3-208ENST00000469802 ZNF788Q6ZQV5 615 aa13.42□□□□□ -0.26
COL9A3-208ENST00000469802 VMO1Q7Z5L0 202 aa13.42□□□□□ -0.26
COL9A3-208ENST00000469802 PIP4P2Q8N4L2 257 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms