RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 RBM48Q5RL73 367 aaKnown RBP10.09□□□□□ -0.79
VPS13D-204ENST00000469054 PRAMEF6Q5VXH4 476 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 XAF1Q6GPH4 301 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 RPL22L1Q6P5R6 122 aaKnown RBP10.09□□□□□ -0.79
VPS13D-204ENST00000469054 MOGAT3Q86VF5 341 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 ZDHHC23Q8IYP9 409 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 ZNF676Q8N7Q3 588 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 NANOGP1Q8N7R0 232 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 ZNF485Q8NCK3 441 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 ZNF420Q8TAQ5 688 aaPredicted RBP10.09□□□□□ -0.79
VPS13D-204ENST00000469054 OR5P3Q8WZ94 311 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 SGCDQ92629 289 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 TIMD4Q96H15 378 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 C18orf12Q96KH6 178 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 COX4I2Q96KJ9 171 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 HIST1H2AAQ96QV6 131 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 MICU1Q9BPX6 476 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 CDCA4Q9BXL8 241 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 C14orf119Q9NWQ9 140 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 PAK1IP1Q9NWT1 392 aaPredicted RBP10.09□□□□□ -0.79
VPS13D-204ENST00000469054 UBAP1Q9NZ09 502 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 HHLA2Q9UM44 414 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 ERGIC3Q9Y282 383 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 TEX15Q9BXT5 2789 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 MAST4O15021 2626 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 VPS13CQ709C8 3753 aa10.09□□□□□ -0.79
VPS13D-204ENST00000469054 IGHV4-61A0A0C4DH41 118 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 TRBV2A0A0J9YWF9 115 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 A6NIN4 97 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 TMEM178BH3BS89 294 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 IFNL4K9M1U5 179 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 SMAD7O15105 426 aaKnown RBP10.08□□□□□ -0.8
VPS13D-204ENST00000469054 OGG1O15527 345 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 ZFPL1O95159 310 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 LALBAP00709 142 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 NRASP01111 189 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 GRPP07492 148 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 FOSL1P15407 271 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 USF1P22415 310 aaPredicted RBP10.08□□□□□ -0.8
VPS13D-204ENST00000469054 CDH15P55291 814 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 WNT4P56705 351 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 LOXL1Q08397 574 aaPredicted RBP10.08□□□□□ -0.8
VPS13D-204ENST00000469054 HNRNPA0Q13151 305 aaKnown RBP10.08□□□□□ -0.8
VPS13D-204ENST00000469054 CDK5R1Q15078 307 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 MPPED2Q15777 294 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 ZNF181Q2M3W8 571 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 CEACAM21Q3KPI0 293 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 CEP78Q5JTW2 689 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 CLVS2Q5SYC1 327 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 TMEM42Q69YG0 159 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 MOB3CQ70IA8 216 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 PEG10Q86TG7 708 aaKnown RBP10.08□□□□□ -0.8
VPS13D-204ENST00000469054 WDR86Q86TI4 376 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 MAPK1IP1LQ8NDC0 245 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 OR1M1Q8NGA1 313 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 OR5AK2Q8NH90 309 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 Q8TCH9 128 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 RPS4Y2Q8TD47 263 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 HPSE2Q8WWQ2 592 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 RAB1CQ92928 201 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 C10orf35Q96D05 121 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 RNF170Q96K19 258 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 PDCD1LG2Q9BQ51 273 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 RTL8AQ9BWD3 113 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 FGF23Q9GZV9 251 aaPredicted RBP10.08□□□□□ -0.8
VPS13D-204ENST00000469054 COMMD4Q9H0A8 199 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 FN3KRPQ9HA64 309 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 PLEKHA1Q9HB21 404 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 TRIM36Q9NQ86 728 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 UFSP2Q9NUQ7 469 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 DCAF16Q9NXF7 216 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 ERVK-18Q9QC07 812 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 BLOC1S6Q9UL45 172 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 WIPI2Q9Y4P8 454 aa10.08□□□□□ -0.8
VPS13D-204ENST00000469054 SIRT4Q9Y6E7 314 aaPredicted RBP10.08□□□□□ -0.8
VPS13D-204ENST00000469054 ZNF469Q96JG9 3925 aaPredicted RBP10.07□□□□□ -0.8
VPS13D-204ENST00000469054 A6NLC8 198 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 TMEM210A6NLX4 147 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 LRRC30A6NM36 301 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 RGS10O43665 173 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 LMX1BO60663 402 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 INHBBP09529 407 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 IRF2P14316 349 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 THBS2P35442 1172 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 RBMXP38159 391 aaKnown RBP10.07□□□□□ -0.8
VPS13D-204ENST00000469054 TAS2R43P59537 309 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 ZNF154Q13106 437 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 IRF3Q14653 427 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 FAM76BQ5HYJ3 339 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 AVPI1Q5T686 147 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 PRSS48Q7RTY5 328 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 C11orf53Q8IXP5 236 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 OR5A2Q8NGI9 324 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 OR11L1Q8NGX0 322 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 OR10AC1Q8NH08 325 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 HPS1Q92902 700 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 MND1Q9BWT6 205 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 GPR173Q9NS66 373 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 NPTNQ9Y639 398 aa10.07□□□□□ -0.8
VPS13D-204ENST00000469054 OTOGQ6ZRI0 2925 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms