RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 TMEM255AQ5JRV8 349 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 PLCXD3Q63HM9 321 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 FAM90A1Q86YD7 464 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 NRG4Q8WWG1 115 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 GGHQ92820 318 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 SPSB1Q96BD6 273 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 PELI1Q96FA3 418 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 RNF170Q96K19 258 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 LYZL4Q96KX0 146 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 FKBP14Q9NWM8 211 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 ABCA12Q86UK0 2595 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 PRR32B1ATL7 298 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 PSMD9O00233 223 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 P2RY10O00398 339 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 SMAD7O15105 426 aaKnown RBP9.04□□□□□ -0.96
UBR4-208ENST00000459947 APOL3O95236 402 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 MUC1P15941 1255 aaPredicted RBP9.04□□□□□ -0.96
UBR4-208ENST00000459947 FAM166AQ6J272 317 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 MOB3CQ70IA8 216 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 LHFPL3Q86UP9 236 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 LRRC28Q86X40 367 aaPredicted RBP9.04□□□□□ -0.96
UBR4-208ENST00000459947 OR1M1Q8NGA1 313 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 OR5AK2Q8NH90 309 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 ZNF184Q99676 751 aaPredicted RBP9.04□□□□□ -0.96
UBR4-208ENST00000459947 MND1Q9BWT6 205 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 TTTY10Q9BZA0 68 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 PKIBQ9C010 78 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 ZNF319Q9P2F9 582 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 RHBDD3Q9Y3P4 386 aa9.04□□□□□ -0.96
UBR4-208ENST00000459947 A0A1B0GTI1 187 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 PNPP00491 289 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 ACAA1P09110 424 aaPredicted RBP9.03□□□□□ -0.96
UBR4-208ENST00000459947 OR12D2P58182 307 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 ST3GAL4Q11206 333 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 ITPKCQ96DU7 683 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 DMRTB1Q96MA1 342 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 CHST5Q9GZS9 411 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 RHOFQ9HBH0 211 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 BABAM2Q9NXR7 383 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 PPIAL4CA0A0B4J2A2 164 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 ISPDA4D126 451 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 ANKRD61A6NGH8 418 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 ZNF850A8MQ14 1090 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 J3QLI3 93 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 CYB5AP00167 134 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 LIMS3P0CW19 117 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 LIMS4P0CW20 117 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 FUT6P51993 359 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 GABARAPL2P60520 117 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 FIP1L1Q6UN15 594 aaKnown RBP9.03□□□□□ -0.96
UBR4-208ENST00000459947 DCDC5Q6ZRR9 648 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 KCTD8Q6ZWB6 473 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 RFLNBQ8N5W9 214 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 BPIFB6Q8NFQ5 453 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 CLDND2Q8NHS1 167 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 ZNF665Q9H7R5 613 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 PATZ1Q9HBE1 687 aaKnown RBP9.03□□□□□ -0.96
UBR4-208ENST00000459947 ISYNA1Q9NPH2 558 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 COL12A1Q99715 3063 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 SPG11Q96JI7 2443 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 USF3Q68DE3 2245 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 NKX6-3A6NJ46 265 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 OR4C45A6NMZ5 311 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 J3QT63 122 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 SLC1A7O00341 560 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 LILRA1O75019 489 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 CDK1P06493 297 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 ATP1B3P54709 279 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 C6orf52Q5T4I8 152 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 GPR148Q8TDV2 347 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 CDCA4Q9BXL8 241 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 AMBNQ9NP70 447 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 C1orf123Q9NWV4 160 aa9.03□□□□□ -0.96
UBR4-208ENST00000459947 CHD3Q12873 2000 aaKnown RBP9.02□□□□□ -0.97
UBR4-208ENST00000459947 IGHV4-61A0A0C4DH41 118 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 hCG_1807616A0A1W2PRN6 198 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 KIR3DL2P43630 455 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 ACSM1Q08AH1 577 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 TRAM1Q15629 374 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 LHFPL2Q6ZUX7 228 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 Q8IYB0 196 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 SVOPQ8N4V2 548 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 OR8B3Q8NGG8 313 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 NEIL1Q96FI4 390 aaPredicted RBP9.02□□□□□ -0.97
UBR4-208ENST00000459947 OR8B2Q96RD0 313 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 ERVK-18Q9QC07 812 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 MYRFQ9Y2G1 1151 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 NOTCH2Q04721 2471 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 GPR37O15354 613 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 OGG1O15527 345 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 LY6HO94772 140 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 MT-ND2P03891 347 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 OCM2P0CE71 109 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 OCMP0CE72 109 aaPredicted RBP9.02□□□□□ -0.97
UBR4-208ENST00000459947 MAPK3P27361 379 aaPredicted RBP9.02□□□□□ -0.97
UBR4-208ENST00000459947 BMXP51813 675 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 WNT4P56705 351 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 CDK5R1Q15078 307 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 FAM76BQ5HYJ3 339 aa9.02□□□□□ -0.97
UBR4-208ENST00000459947 AHSA2Q719I0 299 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms