RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 CD209Q9NNX6 404 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 ZC4H2Q9NQZ6 224 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 PXMP2Q9NR77 195 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 AHSPQ9NZD4 102 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 CARHSP1Q9Y2V2 147 aaKnown RBP1.86□□□□□ -2.11
USP40-209ENST00000452724 SDK2Q58EX2 2172 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 TRIP11Q15643 1979 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 A0A1W2PNN7 141 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 ISPDA4D126 451 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 A8MWL6 223 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 GOLGA8TH3BQL2 631 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 ZBTB5O15062 677 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 PTHP01270 115 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 MAS1P04201 325 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 PFN1P07737 140 aaKnown RBP1.85□□□□□ -2.11
USP40-209ENST00000452724 FGF4P08620 206 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 THRAP10827 490 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 CXCR1P25024 350 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 CLDN18P56856 261 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 PPP1CAP62136 330 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 DNAJC3Q13217 504 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 ZNF235Q14590 738 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 SP6Q3SY56 376 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 KDM4DQ6B0I6 523 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 DAZ4Q86SG3 579 aaKnown RBP1.85□□□□□ -2.11
USP40-209ENST00000452724 LRP11Q86VZ4 500 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 ZNF664Q8N3J9 261 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 SLC26A10Q8NG04 563 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 RXFP2Q8WXD0 754 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 FAM19A4Q96LR4 140 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 RDH12Q96NR8 316 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 DEFB129Q9H1M3 183 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 REEP1Q9H902 201 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 DAZ1Q9NQZ3 744 aaKnown RBP1.85□□□□□ -2.11
USP40-209ENST00000452724 RWDD2AQ9UIY3 292 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 TICRRQ7Z2Z1 1910 aa1.85□□□□□ -2.11
USP40-209ENST00000452724 GOLGA8JA6NMD2 632 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 SUPT3HB4E1H0 165 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 LINC01619G3V211 115 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 CLDN34H7C241 214 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 SIVA1O15304 175 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 CCDC22O60826 627 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 CATP04040 527 aaKnown RBP1.84□□□□□ -2.11
USP40-209ENST00000452724 MMP7P09237 267 aaPredicted RBP1.84□□□□□ -2.11
USP40-209ENST00000452724 GOLGA8HP0CJ92 632 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 CD82P27701 267 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 MAGEA1P43355 309 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 ERFP50548 548 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 STEAP4Q687X5 459 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 CLEC2AQ6UVW9 174 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 ANGPTL8Q6UXH0 198 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 BBS7Q8IWZ6 715 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 SFXN5Q8TD22 340 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 ALS2CR12Q96Q35 445 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 TM2D3Q9BRN9 247 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 FBXO8Q9NRD0 319 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 HEBP1Q9NRV9 189 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 ZNF586Q9NXT0 402 aa1.84□□□□□ -2.11
USP40-209ENST00000452724 COL5A1P20908 1838 aaPredicted RBP1.84□□□□□ -2.12
USP40-209ENST00000452724 BAZ2AQ9UIF9 1905 aaKnown RBP1.83□□□□□ -2.12
USP40-209ENST00000452724 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.83□□□□□ -2.12
USP40-209ENST00000452724 FARS2O95363 451 aaKnown RBP1.83□□□□□ -2.12
USP40-209ENST00000452724 IGLV6-57P01721 117 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 IL3RAP26951 378 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 MPIP34949 423 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 PRSS3P35030 304 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 INCA1Q0VD86 236 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 C5orf64Q2M2E5 130 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 TMEM69Q5SWH9 247 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 NDUFAF7Q7L592 441 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 ADM2Q7Z4H4 148 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 KIF2BQ8N4N8 673 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 OR1S1Q8NH92 325 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 HGDQ93099 445 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 SNF8Q96H20 258 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 PDCD1LG2Q9BQ51 273 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 IQCGQ9H095 443 aaKnown RBP1.83□□□□□ -2.12
USP40-209ENST00000452724 CLSTN2Q9H4D0 955 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 ZNF230Q9UIE0 474 aaPredicted RBP1.83□□□□□ -2.12
USP40-209ENST00000452724 DDX19BQ9UMR2 479 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 NDRG2Q9UN36 371 aaKnown RBP1.83□□□□□ -2.12
USP40-209ENST00000452724 OR51B2Q9Y5P1 312 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 ADGRA3Q8IWK6 1321 aa1.83□□□□□ -2.12
USP40-209ENST00000452724 DHX57Q6P158 1386 aaKnown RBP1.83□□□□□ -2.12
USP40-209ENST00000452724 RPRD2Q5VT52 1461 aaKnown RBP1.82□□□□□ -2.12
USP40-209ENST00000452724 SVILO95425 2214 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 LOC102724200A0A096LPH7 203 aaPredicted RBP1.82□□□□□ -2.12
USP40-209ENST00000452724 A0A0B4J2E0 115 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 IGKV1-6A0A0C4DH72 117 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 MYL12BO14950 172 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 HMMRO75330 724 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 HSBP1O75506 76 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 UPK1BO75841 260 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 SCELO95171 688 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 INAFM2P0DMQ5 153 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 TGM4P49221 684 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 ATP6V0D1P61421 351 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 GBE1Q04446 702 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 KLHL40Q2TBA0 621 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 HHATQ5VTY9 493 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms