RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 TMEM269A0A1B0GVZ9 245 aa16.07■□□□□ 0.16
USP40-207ENST00000450940 DNAJC9-AS1A6NH13 148 aa16.07■□□□□ 0.16
USP40-207ENST00000450940 TMEM210A6NLX4 147 aa16.07■□□□□ 0.16
USP40-207ENST00000450940 ZNF850A8MQ14 1090 aa16.07■□□□□ 0.16
USP40-207ENST00000450940 ZNF879B4DU55 563 aa16.07■□□□□ 0.16
USP40-207ENST00000450940 CDIPTO14735 213 aa16.07■□□□□ 0.16
USP40-207ENST00000450940 ECDO95905 644 aaPredicted RBP16.07■□□□□ 0.16
USP40-207ENST00000450940 MMP9P14780 707 aa16.07■□□□□ 0.16
USP40-207ENST00000450940 ATP6V1B1P15313 513 aa16.07■□□□□ 0.16
USP40-207ENST00000450940 MTNR1AP48039 350 aa16.07■□□□□ 0.16
USP40-207ENST00000450940 MICBQ29980 383 aa16.07■□□□□ 0.16
USP40-207ENST00000450940 ATPAF1Q5TC12 328 aaPredicted RBP16.07■□□□□ 0.16
USP40-207ENST00000450940 C1orf146Q5VVC0 180 aa16.07■□□□□ 0.16
USP40-207ENST00000450940 NXNL2Q5VZ03 156 aa16.07■□□□□ 0.16
USP40-207ENST00000450940 ZDHHC13Q8IUH4 622 aa16.07■□□□□ 0.16
USP40-207ENST00000450940 TMEM163Q8TC26 289 aa16.07■□□□□ 0.16
USP40-207ENST00000450940 C12orf43Q96C57 262 aaKnown RBP16.07■□□□□ 0.16
USP40-207ENST00000450940 FGF23Q9GZV9 251 aaPredicted RBP16.07■□□□□ 0.16
USP40-207ENST00000450940 RASSF4Q9H2L5 321 aa16.07■□□□□ 0.16
USP40-207ENST00000450940 HAO2Q9NYQ3 351 aa16.07■□□□□ 0.16
USP40-207ENST00000450940 COPS3Q9UNS2 423 aa16.07■□□□□ 0.16
USP40-207ENST00000450940 IGHV3OR15-7A0A075B7D8 119 aa16.06■□□□□ 0.16
USP40-207ENST00000450940 IGHV3OR16-10A0A075B7F0 116 aa16.06■□□□□ 0.16
USP40-207ENST00000450940 P2RY10O00398 339 aa16.06■□□□□ 0.16
USP40-207ENST00000450940 DVL1O14640 695 aa16.06■□□□□ 0.16
USP40-207ENST00000450940 MRPL3P09001 348 aaKnown RBP16.06■□□□□ 0.16
USP40-207ENST00000450940 FCGR1AP12314 374 aa16.06■□□□□ 0.16
USP40-207ENST00000450940 MAP2K3P46734 347 aa16.06■□□□□ 0.16
USP40-207ENST00000450940 POU4F2Q12837 409 aa16.06■□□□□ 0.16
USP40-207ENST00000450940 BAMBIQ13145 260 aa16.06■□□□□ 0.16
USP40-207ENST00000450940 AMIGO2Q86SJ2 522 aa16.06■□□□□ 0.16
USP40-207ENST00000450940 TCEANCQ8N8B7 351 aa16.06■□□□□ 0.16
USP40-207ENST00000450940 PNLDC1Q8NA58 520 aaKnown RBP16.06■□□□□ 0.16
USP40-207ENST00000450940 HPSE2Q8WWQ2 592 aa16.06■□□□□ 0.16
USP40-207ENST00000450940 PIGCQ92535 297 aa16.06■□□□□ 0.16
USP40-207ENST00000450940 DMRTB1Q96MA1 342 aa16.06■□□□□ 0.16
USP40-207ENST00000450940 CNN2Q99439 309 aaKnown RBP16.06■□□□□ 0.16
USP40-207ENST00000450940 MNTQ99583 582 aa16.06■□□□□ 0.16
USP40-207ENST00000450940 PKP2Q99959 881 aa16.06■□□□□ 0.16
USP40-207ENST00000450940 ENOPH1Q9UHY7 261 aa16.06■□□□□ 0.16
USP40-207ENST00000450940 SOX21Q9Y651 276 aaPredicted RBP16.06■□□□□ 0.16
USP40-207ENST00000450940 ZNF816-ZNF321PA0A0X1KG74 233 aa16.05■□□□□ 0.16
USP40-207ENST00000450940 SLC22A31A6NKX4 558 aa16.05■□□□□ 0.16
USP40-207ENST00000450940 TMPRSS2O15393 492 aa16.05■□□□□ 0.16
USP40-207ENST00000450940 SRSF10O75494 262 aaKnown RBP16.05■□□□□ 0.16
USP40-207ENST00000450940 RNASE1P07998 156 aaKnown RBP16.05■□□□□ 0.16
USP40-207ENST00000450940 HKR1P10072 659 aa16.05■□□□□ 0.16
USP40-207ENST00000450940 AMY2BP19961 511 aa16.05■□□□□ 0.16
USP40-207ENST00000450940 TGM4P49221 684 aa16.05■□□□□ 0.16
USP40-207ENST00000450940 WDR38Q5JTN6 314 aa16.05■□□□□ 0.16
USP40-207ENST00000450940 BCDIN3DQ7Z5W3 292 aaKnown RBP16.05■□□□□ 0.16
USP40-207ENST00000450940 SCCPDHQ8NBX0 429 aa16.05■□□□□ 0.16
USP40-207ENST00000450940 LRTOMTQ8WZ04 291 aa16.05■□□□□ 0.16
USP40-207ENST00000450940 RNF170Q96K19 258 aa16.05■□□□□ 0.16
USP40-207ENST00000450940 TBX15Q96SF7 602 aa16.05■□□□□ 0.16
USP40-207ENST00000450940 PBOV1Q9GZY1 135 aa16.05■□□□□ 0.16
USP40-207ENST00000450940 SIRPDQ9H106 197 aa16.05■□□□□ 0.16
USP40-207ENST00000450940 DNTTIP1Q9H147 329 aa16.05■□□□□ 0.16
USP40-207ENST00000450940 ADGRL4Q9HBW9 690 aa16.05■□□□□ 0.16
USP40-207ENST00000450940 NUFIP1Q9UHK0 495 aaKnown RBP16.05■□□□□ 0.16
USP40-207ENST00000450940 M0R129 80 aa16.04■□□□□ 0.16
USP40-207ENST00000450940 PSMD9O00233 223 aa16.04■□□□□ 0.16
USP40-207ENST00000450940 RIDAP52758 137 aaKnown RBP16.04■□□□□ 0.16
USP40-207ENST00000450940 SLC9A3R2Q15599 337 aa16.04■□□□□ 0.16
USP40-207ENST00000450940 ZBTB37Q5TC79 503 aa16.04■□□□□ 0.16
USP40-207ENST00000450940 GPR157Q5UAW9 335 aa16.04■□□□□ 0.16
USP40-207ENST00000450940 STUMQ69YW2 141 aa16.04■□□□□ 0.16
USP40-207ENST00000450940 BTN2A1Q7KYR7 527 aa16.04■□□□□ 0.16
USP40-207ENST00000450940 ZDHHC23Q8IYP9 409 aa16.04■□□□□ 0.16
USP40-207ENST00000450940 LY6G5BQ8NDX9 201 aa16.04■□□□□ 0.16
USP40-207ENST00000450940 RPL3LQ92901 407 aaKnown RBP16.04■□□□□ 0.16
USP40-207ENST00000450940 SEH1LQ96EE3 360 aa16.04■□□□□ 0.16
USP40-207ENST00000450940 WDFY2Q96P53 400 aa16.04■□□□□ 0.16
USP40-207ENST00000450940 RAB3IPQ96QF0 476 aaPredicted RBP16.04■□□□□ 0.16
USP40-207ENST00000450940 CCL13Q99616 98 aa16.04■□□□□ 0.16
USP40-207ENST00000450940 H2AFY2Q9P0M6 372 aaPredicted RBP16.04■□□□□ 0.16
USP40-207ENST00000450940 RPUSD1Q9UJJ7 312 aaKnown RBP16.04■□□□□ 0.16
USP40-207ENST00000450940 GPR37O15354 613 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 TOX4O94842 621 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 SFTPBP07988 381 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 ELF3P78545 371 aaPredicted RBP16.03■□□□□ 0.16
USP40-207ENST00000450940 ZNF829Q3KNS6 432 aaPredicted RBP16.03■□□□□ 0.16
USP40-207ENST00000450940 CEACAM21Q3KPI0 293 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 AWAT1Q58HT5 328 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 ZNF322Q6U7Q0 402 aaPredicted RBP16.03■□□□□ 0.16
USP40-207ENST00000450940 ASRGL1Q7L266 308 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 SLC36A1Q7Z2H8 476 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 GID4Q8IVV7 300 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 C3orf56Q8N813 242 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 FAM81AQ8TBF8 368 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 OR51E1Q8TCB6 317 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 SLC25A28Q96A46 364 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 CENPNQ96H22 339 aaPredicted RBP16.03■□□□□ 0.16
USP40-207ENST00000450940 DUX5Q96PT3 197 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 CIB1Q99828 191 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 PCGF1Q9BSM1 259 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 OR51I2Q9H344 312 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 GPR84Q9NQS5 396 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 CLN6Q9NWW5 311 aa16.03■□□□□ 0.16
USP40-207ENST00000450940 CENPVL3A0A0U1RRI6 287 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms