RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 RPEQ96AT9 228 aa2.03□□□□□ -2.08
VPS41-207ENST00000439468 SLIRPQ9GZT3 109 aaKnown RBP2.03□□□□□ -2.08
VPS41-207ENST00000439468 FGF23Q9GZV9 251 aaPredicted RBP2.03□□□□□ -2.08
VPS41-207ENST00000439468 NAA50Q9GZZ1 169 aaKnown RBP2.03□□□□□ -2.08
VPS41-207ENST00000439468 PARP12Q9H0J9 701 aaKnown RBP2.03□□□□□ -2.08
VPS41-207ENST00000439468 C8orf33Q9H7E9 229 aaPredicted RBP2.03□□□□□ -2.08
VPS41-207ENST00000439468 NTN4Q9HB63 628 aa2.03□□□□□ -2.08
VPS41-207ENST00000439468 MRPS30Q9NP92 439 aaKnown RBP2.03□□□□□ -2.08
VPS41-207ENST00000439468 SIRT7Q9NRC8 400 aa2.03□□□□□ -2.08
VPS41-207ENST00000439468 SLC39A1Q9NY26 324 aa2.03□□□□□ -2.08
VPS41-207ENST00000439468 FASNP49327 2511 aaKnown RBP2.03□□□□□ -2.08
VPS41-207ENST00000439468 NCOR1O75376 2440 aa2.03□□□□□ -2.08
VPS41-207ENST00000439468 ASPMQ8IZT6 3477 aa2.03□□□□□ -2.08
VPS41-207ENST00000439468 KIF26AQ9ULI4 1882 aaPredicted RBP2.03□□□□□ -2.09
VPS41-207ENST00000439468 ANKRD11Q6UB99 2663 aaPredicted RBP2.03□□□□□ -2.09
VPS41-207ENST00000439468 KDM3BQ7LBC6 1761 aa2.03□□□□□ -2.09
VPS41-207ENST00000439468 ANKRD26Q9UPS8 1709 aa2.03□□□□□ -2.09
VPS41-207ENST00000439468 CABIN1Q9Y6J0 2220 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 DMDP11532 3685 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 NAIPQ13075 1403 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 PALLDQ8WX93 1383 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 TSPAN11A1L157 253 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 COLCA2A8K830 154 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 GABRR3A8MPY1 467 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 SYCE1LA8MT33 242 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 NDUFC2-KCTD14E9PQ53 114 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 DNASE2O00115 360 aaPredicted RBP2.02□□□□□ -2.09
VPS41-207ENST00000439468 REM1O75628 298 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 CCNKO75909 580 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 YIF1AO95070 293 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 WISP3O95389 354 aaPredicted RBP2.02□□□□□ -2.09
VPS41-207ENST00000439468 HLA-HP01893 362 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 APCSP02743 223 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 STAG3L3P0CL85 134 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 PGA4P0DJD7 388 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 PGA3P0DJD8 388 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 PGA5P0DJD9 388 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 MUC1P15941 1255 aaPredicted RBP2.02□□□□□ -2.09
VPS41-207ENST00000439468 NPY1RP25929 384 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 LOXP28300 417 aaPredicted RBP2.02□□□□□ -2.09
VPS41-207ENST00000439468 POLR2IP36954 125 aaKnown RBP2.02□□□□□ -2.09
VPS41-207ENST00000439468 PMELP40967 661 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 RBM34P42696 430 aaKnown RBP2.02□□□□□ -2.09
VPS41-207ENST00000439468 CCNG1P51959 295 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 RPL23P62829 140 aaKnown RBP2.02□□□□□ -2.09
VPS41-207ENST00000439468 CYP24A1Q07973 514 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 IFT88Q13099 833 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 MPV17L2Q567V2 206 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 SMIM5Q71RC9 77 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 HORMAD1Q86X24 394 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 CALHM1Q8IU99 346 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 CDKL3Q8IVW4 592 aaPredicted RBP2.02□□□□□ -2.09
VPS41-207ENST00000439468 JAGN1Q8N5M9 183 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 COMMD1Q8N668 190 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 ZNF645Q8N7E2 425 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 OR6Q1Q8NGQ2 317 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 OR52P1PQ8NH57 321 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 OR2AG1Q9H205 316 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 MRPL22Q9NWU5 206 aaKnown RBP2.02□□□□□ -2.09
VPS41-207ENST00000439468 CLN6Q9NWW5 311 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 YARS2Q9Y2Z4 477 aaKnown RBP2.02□□□□□ -2.09
VPS41-207ENST00000439468 RHBDD3Q9Y3P4 386 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 RFNGQ9Y644 331 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 ZNF462Q96JM2 2506 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 BCORQ6W2J9 1755 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 GCN1Q92616 2671 aaKnown RBP2.02□□□□□ -2.09
VPS41-207ENST00000439468 USP24Q9UPU5 2620 aa2.02□□□□□ -2.09
VPS41-207ENST00000439468 NAV2Q8IVL1 2488 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 MAP2P11137 1827 aaKnown RBP2.01□□□□□ -2.09
VPS41-207ENST00000439468 COL5A3P25940 1745 aaPredicted RBP2.01□□□□□ -2.09
VPS41-207ENST00000439468 TJP1Q07157 1748 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 TMEM150BA6NC51 233 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 H0YJW9 148 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 K7EM74 188 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 VAMP5O95183 116 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 TDP2O95551 362 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 FGFR1OPO95684 399 aaKnown RBP2.01□□□□□ -2.09
VPS41-207ENST00000439468 ZNF286BP0CG31 522 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 RAB4AP20338 218 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 CD70P32970 193 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 ZNF121P58317 390 aaPredicted RBP2.01□□□□□ -2.09
VPS41-207ENST00000439468 TAS2R46P59540 309 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 CDK5Q00535 292 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 RAD51Q06609 339 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 ART3Q13508 389 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 KIR2DS1Q14954 304 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 HIKESHIQ53FT3 197 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 TCEAL5Q5H9L2 206 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 AVPI1Q5T686 147 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 PIP5KL1Q5T9C9 394 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 STUMQ69YW2 141 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 ZFP1Q6P2D0 407 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 FAM122BQ7Z309 247 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 SNX20Q7Z614 316 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 TMCO2Q7Z6W1 182 aaPredicted RBP2.01□□□□□ -2.09
VPS41-207ENST00000439468 MICU2Q8IYU8 434 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 C8orf31Q8N9H6 132 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 TCEAL3Q969E4 200 aa2.01□□□□□ -2.09
VPS41-207ENST00000439468 KIAA1143Q96AT1 154 aaPredicted RBP2.01□□□□□ -2.09
VPS41-207ENST00000439468 APH1AQ96BI3 265 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms