RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ZNF12P17014 697 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 ADRA2CP18825 462 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 SNRPGP62308 76 aaKnown RBP12.69□□□□□ -0.38
LIMS3-201ENST00000437679 CSNK2BP67870 215 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 HOXA4Q00056 320 aaPredicted RBP12.69□□□□□ -0.38
LIMS3-201ENST00000437679 MFGE8Q08431 387 aaPredicted RBP12.69□□□□□ -0.38
LIMS3-201ENST00000437679 RIPPLY1Q0D2K3 151 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 MEDAGQ5VYS4 303 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 LYPD2Q6UXB3 125 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 BTNL3Q6UXE8 466 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 PLEKHG7Q6ZR37 379 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 WDR86Q86TI4 376 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 C11orf53Q8IXP5 236 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 GCSAMQ8N6F7 178 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 LRRC29Q8WV35 223 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 OR5P3Q8WZ94 311 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 UBE2FQ969M7 185 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 PPP1R14AQ96A00 147 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 RNF170Q96K19 258 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 OPN4Q9UHM6 478 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 OR52A1Q9UKL2 312 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 GMPPBQ9Y5P6 360 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 SNX5Q9Y5X3 404 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 FBN1P35555 2871 aaKnown RBP12.68□□□□□ -0.38
LIMS3-201ENST00000437679 METTL15A6NJ78 407 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 ENTPD6O75354 484 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 SRSF10O75494 262 aaKnown RBP12.68□□□□□ -0.38
LIMS3-201ENST00000437679 RPP14O95059 124 aaKnown RBP12.68□□□□□ -0.38
LIMS3-201ENST00000437679 LHBP01229 141 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 IGLV3-1P01715 115 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 TTRP02766 147 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 EPHA1P21709 976 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 PSMB10P40306 273 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 MTNR1AP48039 350 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 NPY4RP50391 375 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 SLC25A30Q5SVS4 291 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 ZBTB37Q5TC79 503 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 WDR82Q6UXN9 313 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 SSX6Q7RTT6 188 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 ELMOD2Q8IZ81 293 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 MBOAT4Q96T53 435 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 TLNRD1Q9H1K6 362 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 ERVK-18Q9QC07 812 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 ENPP5Q9UJA9 477 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 PIGLQ9Y2B2 252 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 AUP1Q9Y679 476 aa12.68□□□□□ -0.38
LIMS3-201ENST00000437679 E9PQ18 207 aa12.67□□□□□ -0.38
LIMS3-201ENST00000437679 CDIPTO14735 213 aa12.67□□□□□ -0.38
LIMS3-201ENST00000437679 ADAM20O43506 726 aa12.67□□□□□ -0.38
LIMS3-201ENST00000437679 SULT1C4O75897 302 aa12.67□□□□□ -0.38
LIMS3-201ENST00000437679 DHRS3O75911 302 aa12.67□□□□□ -0.38
LIMS3-201ENST00000437679 GYPAP02724 150 aa12.67□□□□□ -0.38
LIMS3-201ENST00000437679 EGR1P18146 543 aa12.67□□□□□ -0.38
LIMS3-201ENST00000437679 OCLNQ16625 522 aa12.67□□□□□ -0.38
LIMS3-201ENST00000437679 MICBQ29980 383 aa12.67□□□□□ -0.38
LIMS3-201ENST00000437679 WDR25Q64LD2 544 aaPredicted RBP12.67□□□□□ -0.38
LIMS3-201ENST00000437679 KRT74Q7RTS7 529 aa12.67□□□□□ -0.38
LIMS3-201ENST00000437679 FAM220AQ7Z4H9 259 aa12.67□□□□□ -0.38
LIMS3-201ENST00000437679 ZNF418Q8TF45 676 aaPredicted RBP12.67□□□□□ -0.38
LIMS3-201ENST00000437679 HPSE2Q8WWQ2 592 aa12.67□□□□□ -0.38
LIMS3-201ENST00000437679 RAB40AQ8WXH6 277 aa12.67□□□□□ -0.38
LIMS3-201ENST00000437679 RPL3LQ92901 407 aaKnown RBP12.67□□□□□ -0.38
LIMS3-201ENST00000437679 RNFT2Q96EX2 444 aa12.67□□□□□ -0.38
LIMS3-201ENST00000437679 TECTBQ96PL2 329 aa12.67□□□□□ -0.38
LIMS3-201ENST00000437679 SLC29A1Q99808 456 aa12.67□□□□□ -0.38
LIMS3-201ENST00000437679 IGHV3OR15-7A0A075B7D8 119 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 A0A0A6YYJ9 748 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 IGHV2-70DA0A0C4DH43 119 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 MPZL2O60487 215 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 MUC1P15941 1255 aaPredicted RBP12.66□□□□□ -0.38
LIMS3-201ENST00000437679 FAHP16930 419 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 CFHR2P36980 270 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 GPM6AP51674 278 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 GNG3P63215 75 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 ACTC1P68032 377 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 ACTA1P68133 377 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 SRSF2Q01130 221 aaKnown RBP12.66□□□□□ -0.38
LIMS3-201ENST00000437679 PAX8Q06710 450 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 ZSCAN26Q16670 478 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 CEACAM21Q3KPI0 293 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 ARMCX4Q5H9R4 360 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 FAM76BQ5HYJ3 339 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 CEP78Q5JTW2 689 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 TEX36Q5VZQ5 186 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 CD276Q5ZPR3 534 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 PLCXD3Q63HM9 321 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 ZNF841Q6ZN19 808 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 MOB3CQ70IA8 216 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 FAM90A1Q86YD7 464 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 SCCPDHQ8NBX0 429 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 OR10Z1Q8NGY1 313 aa12.66□□□□□ -0.38
LIMS3-201ENST00000437679 NUDT16L1Q9BRJ7 211 aaKnown RBP12.66□□□□□ -0.38
LIMS3-201ENST00000437679 LOC100130705A0A1B0GUX0 176 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 OR5B21A6NL26 309 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 SRRM5B3KS81 715 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 ZNF732B4DXR9 585 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 P2RY10O00398 339 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 TNFRSF13BO14836 293 aaPredicted RBP12.65□□□□□ -0.38
LIMS3-201ENST00000437679 NRASP01111 189 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 FPR2P25090 351 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms