RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 SMIM21Q3B7S5 101 aa8.77□□□□□ -1
USP54-205ENST00000424265 PEAR1Q5VY43 1037 aaPredicted RBP8.77□□□□□ -1
USP54-205ENST00000424265 MUC20Q8N307 709 aaPredicted RBP8.77□□□□□ -1
USP54-205ENST00000424265 GPR119Q8TDV5 335 aa8.77□□□□□ -1
USP54-205ENST00000424265 RGP1Q92546 391 aaPredicted RBP8.77□□□□□ -1
USP54-205ENST00000424265 FAM71F1Q96KD3 344 aaPredicted RBP8.77□□□□□ -1
USP54-205ENST00000424265 TMEM269A0A1B0GVZ9 245 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 FRG2CA6NGY1 282 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 PPP5D1E7EU14 171 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 TRGC1P0CF51 173 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 PGAM2P15259 253 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 RAE1P78406 368 aaKnown RBP8.77□□□□□ -1.01
USP54-205ENST00000424265 C17orf67Q0P5P2 114 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 DUSP8Q13202 625 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 ZNF658BQ4V348 819 aaPredicted RBP8.77□□□□□ -1.01
USP54-205ENST00000424265 RNLSQ5VYX0 342 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 DHRS11Q6UWP2 260 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 ABHD12BQ7Z5M8 362 aaPredicted RBP8.77□□□□□ -1.01
USP54-205ENST00000424265 DPF1Q92782 380 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 ZBTB8AQ96BR9 441 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 AP1S3Q96PC3 154 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 ALKBH3Q96Q83 286 aaPredicted RBP8.77□□□□□ -1.01
USP54-205ENST00000424265 CHODLQ9H9P2 273 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 TNFSF18Q9UNG2 199 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 C22orf46C9J442 243 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 WBP2NLQ6ICG8 309 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 OR4K15Q8NH41 348 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 OR14L1PQ8NHC6 308 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 GRHL3Q8TE85 626 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 TEAD3Q99594 435 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 CHST8Q9H2A9 424 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 DENND4CQ5VZ89 1909 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 GBF1Q92538 1859 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 GLCEO94923 617 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 PPBPP02775 128 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 AKAIN1P0CW23 69 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 RPL23AP62750 156 aaKnown RBP8.77□□□□□ -1.01
USP54-205ENST00000424265 ARG2P78540 354 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 ARF1P84077 181 aaKnown RBP8.77□□□□□ -1.01
USP54-205ENST00000424265 SGCBQ16585 318 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 RPS19BP1Q86WX3 136 aaKnown RBP8.77□□□□□ -1.01
USP54-205ENST00000424265 OR2I1PQ8NGU4 316 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 RPUSD4Q96CM3 377 aaKnown RBP8.77□□□□□ -1.01
USP54-205ENST00000424265 HIST1H2BLQ99880 126 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 TAF9BQ9HBM6 251 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 A0A1B0GTL3 188 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 FITM1A5D6W6 292 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 CPSF4LA6NMK7 179 aaKnown RBP8.77□□□□□ -1.01
USP54-205ENST00000424265 RAB40ALP0C0E4 278 aa8.77□□□□□ -1.01
USP54-205ENST00000424265 C17orf82Q86X59 251 aaPredicted RBP8.77□□□□□ -1.01
USP54-205ENST00000424265 ACTR3CQ9C0K3 210 aaPredicted RBP8.77□□□□□ -1.01
USP54-205ENST00000424265 MYO10Q9HD67 2058 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 GSTZ1O43708 216 aaPredicted RBP8.76□□□□□ -1.01
USP54-205ENST00000424265 HIST1H2BKO60814 126 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 GASTP01350 101 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 TK1P04183 234 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 HIST1H2BJP06899 126 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 HIST1H2BOP23527 126 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 HIST1H2BBP33778 126 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 HIST1H2BDP58876 126 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 TAS2R43P59537 309 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 HIST1H2BCP62807 126 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 HIST2H2BEQ16778 126 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.76□□□□□ -1.01
USP54-205ENST00000424265 DCAF12L2Q5VW00 463 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 DPY19L2P2Q6ZN68 376 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 MYPOPQ86VE0 399 aaPredicted RBP8.76□□□□□ -1.01
USP54-205ENST00000424265 TMEM183AQ8IXX5 376 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 OR10H4Q8NGA5 316 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 OR13C8Q8NGS7 320 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 HIST1H2BHQ93079 126 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 ZNF501Q96CX3 271 aaPredicted RBP8.76□□□□□ -1.01
USP54-205ENST00000424265 HIST1H2BNQ99877 126 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 HIST1H2BMQ99879 126 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 MRPL22Q9NWU5 206 aaKnown RBP8.76□□□□□ -1.01
USP54-205ENST00000424265 SLC25A37Q9NYZ2 338 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 CCL27Q9Y4X3 112 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 A0A1W2PPK0 400 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 SERINC4A6NH21 518 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 EIF1AYO14602 144 aaKnown RBP8.76□□□□□ -1.01
USP54-205ENST00000424265 TRAPPC6AO75865 159 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 HLA-GP17693 338 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 BRS3P32247 399 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 EIF1AXP47813 144 aaKnown RBP8.76□□□□□ -1.01
USP54-205ENST00000424265 H2BFSP57053 126 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 ADAM8P78325 824 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 ZNF793Q6ZN11 406 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 ESPNLQ6ZVH7 1005 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 VRK2Q86Y07 508 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 OR4S1Q8NGB4 309 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 PPP1R1CQ8WVI7 109 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 POFUT1Q9H488 388 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 APMAPQ9HDC9 416 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 FAM60AQ9NP50 221 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 BET1LQ9NYM9 111 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 NAGKQ9UJ70 344 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 FLVCR1Q9Y5Y0 555 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 OBSL1O75147 1896 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 EFNB1P98172 346 aa8.76□□□□□ -1.01
USP54-205ENST00000424265 CYCSP99999 105 aaKnown RBP8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms