RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 OR51F2Q8NH61 342 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 NEK7Q8TDX7 302 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 SLC25A21Q9BQT8 299 aaPredicted RBP11.76□□□□□ -0.53
VPS54-203ENST00000409558 CHRNA10Q9GZZ6 450 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 ARRDC1-AS1Q9H2J1 176 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 FN3KRPQ9HA64 309 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 CADP27708 2225 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 IGKV1D-8A0A087WSZ0 117 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 F12P00748 615 aaPredicted RBP11.76□□□□□ -0.53
VPS54-203ENST00000409558 CELA3AP09093 270 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 ASCL1P50553 236 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 C5orf46Q6UWT4 87 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 ST8SIA2Q92186 375 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 PRRG4Q9BZD6 226 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 IGLV3-12A0A075B6K2 115 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 IGHV1-45A0A0A0MS14 117 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 LINC00862A6NCI5 91 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 COX6A1P12074 109 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 UBALD1Q8TB05 177 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 THRSPQ92748 146 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 MRGPRFQ96AM1 343 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 URM1Q9BTM9 101 aaKnown RBP11.75□□□□□ -0.53
VPS54-203ENST00000409558 ZNF629Q9UEG4 869 aaPredicted RBP11.75□□□□□ -0.53
VPS54-203ENST00000409558 AQP7P3A6NL99 342 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 ZIC3O60481 467 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 EDN3P14138 238 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 NOVA1P51513 510 aaKnown RBP11.75□□□□□ -0.53
VPS54-203ENST00000409558 ZP4Q12836 540 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 RSU1Q15404 277 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 CEACAM16Q2WEN9 425 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 NHLRC3Q5JS37 347 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 ZNF385CQ66K41 422 aaPredicted RBP11.75□□□□□ -0.53
VPS54-203ENST00000409558 ATRAIDQ6UW56 229 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 AAED1Q7RTV5 226 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 KCNG3Q8TAE7 436 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 FGFBP3Q8TAT2 258 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 NXT1Q9UKK6 140 aaKnown RBP11.75□□□□□ -0.53
VPS54-203ENST00000409558 LSM5Q9Y4Y9 91 aaKnown RBP11.75□□□□□ -0.53
VPS54-203ENST00000409558 HIST1H1DP16402 221 aaKnown RBP11.75□□□□□ -0.53
VPS54-203ENST00000409558 ZNF32P17041 273 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 ITGA3P26006 1051 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 PTGFRP43088 359 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 MRPL14Q6P1L8 145 aaKnown RBP11.75□□□□□ -0.53
VPS54-203ENST00000409558 LYG2Q86SG7 212 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 GPR137CQ8N3F9 429 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 OR6X1Q8NH79 312 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 AQP3Q92482 292 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 PAPOLGQ9BWT3 736 aaKnown RBP11.75□□□□□ -0.53
VPS54-203ENST00000409558 PTTG3PQ9NZH4 202 aa11.75□□□□□ -0.53
VPS54-203ENST00000409558 A0A1W2PR80 420 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 ACKR3P25106 362 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 MSX1P28360 303 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 SUCLG1P53597 346 aaKnown RBP11.74□□□□□ -0.53
VPS54-203ENST00000409558 PIGYQ3MUY2 71 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 TMEM88Q6PEY1 159 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 SLC25A47Q6Q0C1 308 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 GJC3Q8NFK1 279 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 FOXRED1Q96CU9 486 aaPredicted RBP11.74□□□□□ -0.53
VPS54-203ENST00000409558 REEP6Q96HR9 211 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 PADI1Q9ULC6 663 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 OR14I1A6ND48 311 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 SGCEO43556 437 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 IGHMP01871 453 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 P2RY4P51582 365 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 C1orf100Q5SVJ3 147 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 THOC3Q96J01 351 aaKnown RBP11.74□□□□□ -0.53
VPS54-203ENST00000409558 ZNF84P51523 738 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 MAML2Q8IZL2 1156 aaPredicted RBP11.74□□□□□ -0.53
VPS54-203ENST00000409558 OR5M8Q8NGP6 311 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 RFPL4AA6NLU0 287 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 RFPL4AL1F8VTS6 287 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 ISG15P05161 165 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 LIFP15018 202 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 FSTP19883 344 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 CASRP41180 1078 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 C11orf87Q6NUJ2 197 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 SLC16A14Q7RTX9 510 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 SCARB1Q8WTV0 552 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 C12orf49Q9H741 205 aa11.74□□□□□ -0.53
VPS54-203ENST00000409558 OR7C1O76099 320 aaPredicted RBP11.73□□□□□ -0.53
VPS54-203ENST00000409558 BPNT1O95861 308 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 FOXG1P55316 489 aaPredicted RBP11.73□□□□□ -0.53
VPS54-203ENST00000409558 SUMO3P55854 103 aaPredicted RBP11.73□□□□□ -0.53
VPS54-203ENST00000409558 MEF2DQ14814 521 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 COL19A1Q14993 1142 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 ATP1A1-AS1Q5TC04 95 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 FAM180AQ6UWF9 173 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 DRAM2Q6UX65 266 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 NAXDQ8IW45 347 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 MED30Q96HR3 178 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 PIGQQ9BRB3 760 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 ZNF2Q9BSG1 426 aaPredicted RBP11.73□□□□□ -0.53
VPS54-203ENST00000409558 PCED1AQ9H1Q7 454 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 HRH4Q9H3N8 390 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 PCNX2A6NKB5 2137 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 MSGN1A6NI15 193 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 EFSO43281 561 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 MOB3CQ70IA8 216 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 DOK3Q7L591 496 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 HDDC2Q7Z4H3 204 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms